Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_P06
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    29   0.92 
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    27   4.9  
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    27   4.9  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   6.5  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    26   6.5  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    26   8.6  

>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = +2

Query: 599 RSENE*AHLEFQLYGASHPQGLMIQKMNNLQSKTVQITNIKKRAINQKI 745
           + +NE   LE +L+ ASH   + I+K+N+ +++  ++ N    + N ++
Sbjct: 264 KHKNEIFQLEEKLHEASHEAEISIKKLNDAENRIKELENNPTLSFNPEL 312


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +1

Query: 397 SRERSKDRTERHRDKYKEPERPRRDYDRGKSSYRE--HN 507
           +++RS++R++  +    + E  RR Y   ++++RE  HN
Sbjct: 180 NQDRSRERSDNEQHSSDKREHSRRSYRNDRNNWRERTHN 218


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 391 NCSRERSKDRTERHRDKYKEPERPRRDYDRGKSSYREHN 507
           N  +E+ K+  +  R+K  E E+P++   + KSS +E N
Sbjct: 214 NKGKEKQKELKKGKREKKDEEEKPKKKKQK-KSSKKEKN 251


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +2

Query: 74  YTHNIFENQESRFSFNAVNLDKCISVHLCINIKNQFTNLRLQLVLVDRTISRIQ*KVKKY 253
           Y   I +  +    F  +NL KC++  L    KN   ++  +L  + R I   +    KY
Sbjct: 597 YNEGIVKLNKDFDDFTPLNLLKCVNYSLMEFQKNSTFDMLEKLYEIGREIDMSKFSTLKY 656

Query: 254 NL 259
           NL
Sbjct: 657 NL 658


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 677 MNNLQSKTVQITNIKKRAINQKIP 748
           ++  + KTVQ+ NIKKR+  + IP
Sbjct: 205 LSGSRDKTVQVWNIKKRSAVRTIP 228


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 439 KYKEPERPRRDYDRGKSSYR 498
           +Y  PE+P++ + +GKSS R
Sbjct: 79  EYPPPEKPKKAHGKGKSSKR 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,359,779
Number of Sequences: 5004
Number of extensions: 36381
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)