Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_P06
(919 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0506 - 18188785-18190599 34 0.18
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228... 34 0.18
03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534,290... 33 0.24
08_01_0397 - 3509186-3510291,3510322-3512335 33 0.32
02_03_0387 - 18412064-18412144,18412280-18412361,18412922-184131... 33 0.32
11_06_0490 - 24293218-24293373,24293454-24293521,24293845-242939... 33 0.42
03_05_0865 - 28365430-28367640 31 0.97
02_03_0131 - 15576422-15577021 31 1.3
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 30 2.2
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 30 2.2
10_01_0076 - 987092-987671,987747-987812,988201-988363,988467-98... 29 3.9
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 29 5.2
08_02_1084 - 24232968-24234779 28 9.0
>09_04_0506 - 18188785-18190599
Length = 604
Score = 33.9 bits (74), Expect = 0.18
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +1
Query: 400 RERSKDRTERHRDKYKEPERPRRDYDRGKSSYRE 501
RER +DR ER RD+ +E ER RD DR + YR+
Sbjct: 525 RERDRDR-ERERDRDRERER-ERDRDRERERYRD 556
Score = 29.9 bits (64), Expect = 3.0
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +1
Query: 400 RERSKDRTERHRDKYKEPERP---RRDYDRGKSSYR 498
RER +D +RH D ++ +R D+DRG+SS R
Sbjct: 551 RERYRDDRDRHGDYHRHGKRESDRNEDWDRGRSSGR 586
>06_01_0318 -
2284481-2284594,2285340-2286044,2286589-2286609,
2287186-2287257,2287762-2287842,2288059-2288133,
2288197-2288484
Length = 451
Score = 33.9 bits (74), Expect = 0.18
Identities = 20/89 (22%), Positives = 34/89 (38%)
Frame = +1
Query: 394 CSRERSKDRTERHRDKYKEPERPRRDYDRGKSSYREHNXXXXXXXXXXXXXXXXRYKPQE 573
C+R + R R ++ + ER R D DRG+ REH+ + +
Sbjct: 274 CARSSPRRRRSRSHERDHDSERDRSDRDRGRHKDREHDRHAREDRDRDYRRSSYSSRNVD 333
Query: 574 EEFLDARREERERIGTLGVSAIWGKSPTR 660
+ + R + +R G +SP R
Sbjct: 334 RQGRERRDRDSDRHGRSSARRSRSRSPNR 362
>03_01_0373 -
2904914-2904949,2905030-2905144,2906446-2906534,
2906670-2906889,2907921-2907985,2908619-2908879,
2909204-2909417,2910643-2910698,2910891-2910947,
2911043-2911115,2912711-2913225
Length = 566
Score = 33.5 bits (73), Expect = 0.24
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 400 RERSKDRTERHRDKYKEPERPRRDYDRGKSSYRE 501
R+R +DR E+ R+K ++ ++ RR DR K +E
Sbjct: 95 RDRDRDRDEKDREKERDKDKERRSRDREKEKEKE 128
Score = 32.3 bits (70), Expect = 0.56
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +1
Query: 391 NCSRERSKDRTERHRDKYKEPERPRRDYDRGKSSYREHNXXXXXXXXXXXXXXXXRYKPQ 570
N R++ KDR +RHRD+ K+ +R R +R + R+ + R + +
Sbjct: 64 NRDRDKDKDR-DRHRDRDKDRDRHRSSRER-RDRDRDRDRDEKDREKERDKDKERRSRDR 121
Query: 571 EEEFLDARREERER 612
E+E + ERER
Sbjct: 122 EKEKEKEKERERER 135
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +1
Query: 400 RERSKDRTERHRDKYKEPERPR-RDYDRGKSSYREHNXXXXXXXXXXXXXXXXRYKPQEE 576
+ER KD+ R RD+ KE E+ + R+ +R K R + RY+ ++
Sbjct: 108 KERDKDKERRSRDREKEKEKEKEREREREKDRER-RSRSRSERRRDDEERDRERYRERDY 166
Query: 577 EFLDARREERE 609
D RR + E
Sbjct: 167 RDRDVRRRKEE 177
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 33.1 bits (72), Expect = 0.32
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +1
Query: 400 RERSKDRTERHRDKYKEPE--RPRRDYDRGKSSYREHNXXXXXXXXXXXXXXXXRYKPQE 573
R+R +DR RHR+K ++ E + R +R K RE +E
Sbjct: 51 RDRDRDRERRHREKERDREERKAREREEREKEKERERARRREERDREERSRRREAAAEEE 110
Query: 574 EEFLDARREERER 612
EE +D R+ R R
Sbjct: 111 EEDVDRDRKRRRR 123
Score = 29.9 bits (64), Expect = 3.0
Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Frame = +1
Query: 400 RERSKDRTERHRDKYKEPERPRR------DYDRGKSSYREHNXXXXXXXXXXXXXXXXRY 561
RERS R R RD+ + R D DR + R H R
Sbjct: 21 RERSSSRHHRDRDRERSSSRHHHREDRDDDRDRDRDRERRHREKERDREERKAREREERE 80
Query: 562 KPQEEEFLDARREERER 612
K +E E RREER+R
Sbjct: 81 KEKERE-RARRREERDR 96
>02_03_0387 -
18412064-18412144,18412280-18412361,18412922-18413142,
18413387-18413745,18413834-18414443,18414546-18414605,
18414685-18414751,18414843-18414936,18415012-18415125,
18415242-18415308,18415386-18415551,18416587-18417080
Length = 804
Score = 33.1 bits (72), Expect = 0.32
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 400 RERSKDRTERHRDKYKEPE-RPRRDYDRGKSSYRE 501
+E+ K+R E HR + K+ RRD DR + SYRE
Sbjct: 14 KEKEKERRETHRREEKDHHGSGRRDRDRDRESYRE 48
>11_06_0490 -
24293218-24293373,24293454-24293521,24293845-24293986,
24294079-24294699,24294791-24294871,24295002-24295072,
24296106-24296176,24296568-24296675,24296786-24297024,
24297493-24297657
Length = 573
Score = 32.7 bits (71), Expect = 0.42
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 400 RERSKDRTERHRDKYKEP-ERPRRDYDRGKSSYREH 504
RER KD+ ER RD+ ++ +R R D DR + +REH
Sbjct: 73 RERDKDK-ERDRDRDRDRRDRDRGDKDRDRDRHREH 107
>03_05_0865 - 28365430-28367640
Length = 736
Score = 31.5 bits (68), Expect = 0.97
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 400 RERSKDRTERHRDKYKEPERPR-RDYDRGKSSYREHN 507
R+R +DR ER RD +R R RD DRG SS R+ +
Sbjct: 86 RDRDRDR-ERRRDDDSRRDRDRDRDRDRGDSSRRDRD 121
>02_03_0131 - 15576422-15577021
Length = 199
Score = 31.1 bits (67), Expect = 1.3
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Frame = +1
Query: 403 ERSKDRTERHRDKYKEPERPR-RDYDRGKSSY-REHNXXXXXXXXXXXXXXXXRYKPQEE 576
+R +DR R RD+ KE +R R RD +R + R+ + ++ +
Sbjct: 29 DRPRDRDHRDRDRDKERDRDRDRDRERRRGERDRKRSRSPSADRSHRRHSHSHSHRGRSS 88
Query: 577 EFLDARREERERIGTLGVSAIWGKSPTRPD 666
DA R +R R G+ +A K +P+
Sbjct: 89 PSPDAGRHKRRRDGSPAAAATDHKDDKKPE 118
>10_08_0106 +
14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +1
Query: 400 RERSKDRTERHRDKYKEPERPR-RDYDRGKSSYRE 501
RER +DR +++RD+ ++ ER R R+ DR + S RE
Sbjct: 793 RERERDR-DQNRDRDRDQERDRDRERDRERESRRE 826
>08_02_1073 -
24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 30.3 bits (65), Expect = 2.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 406 RSKDRTERHRDKYKEPERPRRDYDR 480
RS D +R RD++ +P++PR+ DR
Sbjct: 249 RSVDTFDRTRDEHDQPDKPRKSIDR 273
>10_01_0076 -
987092-987671,987747-987812,988201-988363,988467-988548,
989153-989202,989237-989270,990177-990239,990339-990403,
990485-990560,991274-991353,991514-991628,991729-991830
Length = 491
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = +1
Query: 397 SRERSKDRTERH---RDKYKEPERPR-RDYDRGKSSYREH 504
+RERS DRT D++ +R R RD +RG+ R+H
Sbjct: 317 TRERSHDRTRERDSKEDRHHHRDRDRTRDRERGRDRERDH 356
>01_06_0116 -
26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 400 RERSKDR-TERHRDKYKEPERPRRDYDRGKSSY 495
R+R +DR ER RD+ +E ER ++D +R K Y
Sbjct: 230 RDRERDRERERERDRERERER-QKDREREKKDY 261
>08_02_1084 - 24232968-24234779
Length = 603
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 7/38 (18%)
Frame = +1
Query: 400 RERSKDRTERHRDKYKEPERPR-------RDYDRGKSS 492
RER +DR RD+Y + R R D+DRG+SS
Sbjct: 546 RERERDRHRDDRDRYGDYHRHRDRDSERNEDWDRGRSS 583
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,039,459
Number of Sequences: 37544
Number of extensions: 197804
Number of successful extensions: 540
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -