Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_P04
(881 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 44 2e-05
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 44 2e-05
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 44 2e-05
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 36 0.008
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 36 0.010
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 30 0.38
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 27 3.5
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 27 3.5
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 27 3.5
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 44.4 bits (100), Expect = 2e-05
Identities = 18/23 (78%), Positives = 22/23 (95%)
Frame = +1
Query: 121 RKRTHINIVVIGHVDSGKSTTTG 189
+++ HIN+VVIGHVDSGKSTTTG
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTG 25
Score = 38.7 bits (86), Expect = 0.001
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = +2
Query: 188 GHLIYKCGGIDXRXIXKFXK 247
GHLIYKCGGID R I KF K
Sbjct: 25 GHLIYKCGGIDKRTIEKFEK 44
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 44.4 bits (100), Expect = 2e-05
Identities = 18/23 (78%), Positives = 22/23 (95%)
Frame = +1
Query: 121 RKRTHINIVVIGHVDSGKSTTTG 189
+++ HIN+VVIGHVDSGKSTTTG
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTG 25
Score = 38.7 bits (86), Expect = 0.001
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = +2
Query: 188 GHLIYKCGGIDXRXIXKFXK 247
GHLIYKCGGID R I KF K
Sbjct: 25 GHLIYKCGGIDKRTIEKFEK 44
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 44.4 bits (100), Expect = 2e-05
Identities = 18/23 (78%), Positives = 22/23 (95%)
Frame = +1
Query: 121 RKRTHINIVVIGHVDSGKSTTTG 189
+++ HIN+VVIGHVDSGKSTTTG
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTG 25
Score = 38.7 bits (86), Expect = 0.001
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = +2
Query: 188 GHLIYKCGGIDXRXIXKFXK 247
GHLIYKCGGID R I KF K
Sbjct: 25 GHLIYKCGGIDKRTIEKFEK 44
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 35.9 bits (79), Expect = 0.008
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1
Query: 115 WARKRTHINIVVIGHVDSGKSTTTGS 192
+ RK+ H+NI IGHVD GK+T T +
Sbjct: 47 FVRKKPHVNIGTIGHVDHGKTTLTAA 72
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 35.5 bits (78), Expect = 0.010
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +1
Query: 127 RTHINIVVIGHVDSGKSTTTGS 192
+ H+NIV IGHVD+GKST G+
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGN 257
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 30.3 bits (65), Expect = 0.38
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 136 INIVVIGHVDSGKSTTTG 189
+++VV GHVDSGKST G
Sbjct: 178 VHLVVTGHVDSGKSTMLG 195
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 139 NIVVIGHVDSGKSTTTGS 192
N+ VI HVD GKST T S
Sbjct: 21 NMSVIAHVDHGKSTLTDS 38
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 139 NIVVIGHVDSGKSTTTGS 192
N+ VI HVD GKST T S
Sbjct: 21 NMSVIAHVDHGKSTLTDS 38
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 88 SL*SVTNQKWARKRTHINIVVIGHVDSGKST 180
S+ S N+K R+ N++V+G SGKST
Sbjct: 17 SITSQINRKLIRRGFQFNVMVVGPSGSGKST 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,629,548
Number of Sequences: 5004
Number of extensions: 16068
Number of successful extensions: 50
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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