Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_P04
(881 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 48 1e-05
03_01_0547 + 4093196-4093657,4094267-4095148 48 1e-05
03_01_0544 + 4082528-4082989,4083585-4084466 48 1e-05
03_01_0543 + 4076981-4077442,4078145-4079026 48 1e-05
02_04_0462 + 23131433-23132836 36 0.057
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 33 0.30
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 33 0.40
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 33 0.40
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/23 (86%), Positives = 23/23 (100%)
Frame = +1
Query: 121 RKRTHINIVVIGHVDSGKSTTTG 189
+++THINIVVIGHVDSGKSTTTG
Sbjct: 3 KEKTHINIVVIGHVDSGKSTTTG 25
Score = 33.5 bits (73), Expect = 0.23
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2
Query: 188 GHLIYKCGGIDXRXIXKFXK 247
GHLIYK GGID R I +F K
Sbjct: 25 GHLIYKLGGIDKRVIERFEK 44
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/23 (86%), Positives = 23/23 (100%)
Frame = +1
Query: 121 RKRTHINIVVIGHVDSGKSTTTG 189
+++THINIVVIGHVDSGKSTTTG
Sbjct: 3 KEKTHINIVVIGHVDSGKSTTTG 25
Score = 33.5 bits (73), Expect = 0.23
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2
Query: 188 GHLIYKCGGIDXRXIXKFXK 247
GHLIYK GGID R I +F K
Sbjct: 25 GHLIYKLGGIDKRVIERFEK 44
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/23 (86%), Positives = 23/23 (100%)
Frame = +1
Query: 121 RKRTHINIVVIGHVDSGKSTTTG 189
+++THINIVVIGHVDSGKSTTTG
Sbjct: 3 KEKTHINIVVIGHVDSGKSTTTG 25
Score = 33.5 bits (73), Expect = 0.23
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2
Query: 188 GHLIYKCGGIDXRXIXKFXK 247
GHLIYK GGID R I +F K
Sbjct: 25 GHLIYKLGGIDKRVIERFEK 44
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/23 (86%), Positives = 23/23 (100%)
Frame = +1
Query: 121 RKRTHINIVVIGHVDSGKSTTTG 189
+++THINIVVIGHVDSGKSTTTG
Sbjct: 3 KEKTHINIVVIGHVDSGKSTTTG 25
Score = 33.5 bits (73), Expect = 0.23
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2
Query: 188 GHLIYKCGGIDXRXIXKFXK 247
GHLIYK GGID R I +F K
Sbjct: 25 GHLIYKLGGIDKRVIERFEK 44
>02_04_0462 + 23131433-23132836
Length = 467
Score = 35.5 bits (78), Expect = 0.057
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 112 KWARKRTHINIVVIGHVDSGKSTTTGSFDL 201
K+ R + H+NI IGHVD GK+T T + +
Sbjct: 63 KFERTKPHVNIGTIGHVDHGKTTLTAALTM 92
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 33.1 bits (72), Expect = 0.30
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 115 WARKRTHINIVVIGHVDSGKSTTTGS 192
+ R + H+N+ IGHVD GK+T T +
Sbjct: 61 FTRTKPHVNVGTIGHVDHGKTTLTAA 86
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 32.7 bits (71), Expect = 0.40
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +1
Query: 130 THINIVVIGHVDSGKSTTTG 189
+ +N+ ++GHVDSGKST +G
Sbjct: 246 SQLNLAIVGHVDSGKSTLSG 265
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 32.7 bits (71), Expect = 0.40
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +1
Query: 130 THINIVVIGHVDSGKSTTTG 189
+ +N+ ++GHVDSGKST +G
Sbjct: 246 SQLNLAIVGHVDSGKSTLSG 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,764,350
Number of Sequences: 37544
Number of extensions: 167808
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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