Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_P04
(881 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 46 5e-05
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 46 5e-05
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 46 5e-05
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 46 5e-05
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 46 5e-05
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 34 0.15
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 33 0.36
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 33 0.36
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 32 0.47
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 32 0.47
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 32 0.47
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 31 1.4
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 31 1.4
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 5.8
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 29 5.8
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 29 5.8
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 45.6 bits (103), Expect = 5e-05
Identities = 19/23 (82%), Positives = 22/23 (95%)
Frame = +1
Query: 121 RKRTHINIVVIGHVDSGKSTTTG 189
+++ HINIVVIGHVDSGKSTTTG
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTG 25
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = +2
Query: 188 GHLIYKCGGIDXRXIXKFXK 247
GHLIYKCGGID R I KF K
Sbjct: 25 GHLIYKCGGIDKRTIEKFEK 44
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 45.6 bits (103), Expect = 5e-05
Identities = 19/23 (82%), Positives = 22/23 (95%)
Frame = +1
Query: 121 RKRTHINIVVIGHVDSGKSTTTG 189
+++ HINIVVIGHVDSGKSTTTG
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTG 25
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = +2
Query: 188 GHLIYKCGGIDXRXIXKFXK 247
GHLIYKCGGID R I KF K
Sbjct: 25 GHLIYKCGGIDKRTIEKFEK 44
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 45.6 bits (103), Expect = 5e-05
Identities = 19/23 (82%), Positives = 22/23 (95%)
Frame = +1
Query: 121 RKRTHINIVVIGHVDSGKSTTTG 189
+++ HINIVVIGHVDSGKSTTTG
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTG 25
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = +2
Query: 188 GHLIYKCGGIDXRXIXKFXK 247
GHLIYKCGGID R I KF K
Sbjct: 25 GHLIYKCGGIDKRTIEKFEK 44
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 45.6 bits (103), Expect = 5e-05
Identities = 19/23 (82%), Positives = 22/23 (95%)
Frame = +1
Query: 121 RKRTHINIVVIGHVDSGKSTTTG 189
+++ HINIVVIGHVDSGKSTTTG
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTG 25
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = +2
Query: 188 GHLIYKCGGIDXRXIXKFXK 247
GHLIYKCGGID R I KF K
Sbjct: 25 GHLIYKCGGIDKRTIEKFEK 44
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 45.6 bits (103), Expect = 5e-05
Identities = 19/23 (82%), Positives = 22/23 (95%)
Frame = +1
Query: 121 RKRTHINIVVIGHVDSGKSTTTG 189
+++ HINIVVIGHVDSGKSTTTG
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTG 25
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = +2
Query: 188 GHLIYKCGGIDXRXIXKFXK 247
GHLIYKCGGID R I KF K
Sbjct: 25 GHLIYKCGGIDKRTIEKFEK 44
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 33.9 bits (74), Expect = 0.15
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 127 RTHINIVVIGHVDSGKSTTTG 189
+ HIN+V +GHVD+GKST G
Sbjct: 107 KEHINMVFVGHVDAGKSTIGG 127
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 32.7 bits (71), Expect = 0.36
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +1
Query: 136 INIVVIGHVDSGKSTTTG 189
IN++V+GHVD+GKST G
Sbjct: 171 INLIVVGHVDAGKSTLMG 188
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 32.7 bits (71), Expect = 0.36
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +1
Query: 136 INIVVIGHVDSGKSTTTG 189
IN++V+GHVD+GKST G
Sbjct: 189 INLIVVGHVDAGKSTLMG 206
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 32.3 bits (70), Expect = 0.47
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 121 RKRTHINIVVIGHVDSGKSTTTGS 192
R + H+N+ IGHVD GK+T T +
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSA 68
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 32.3 bits (70), Expect = 0.47
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 121 RKRTHINIVVIGHVDSGKSTTTGS 192
R + H+N+ IGHVD GK+T T +
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSA 69
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 32.3 bits (70), Expect = 0.47
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 121 RKRTHINIVVIGHVDSGKSTTTGS 192
R + H+N+ IGHVD GK+T T +
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSA 69
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +1
Query: 121 RKRTHINIVVIGHVDSGKSTTTGS 192
RKR N+ VI HVD GKST T S
Sbjct: 15 RKRNIRNMSVIAHVDHGKSTLTDS 38
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +1
Query: 121 RKRTHINIVVIGHVDSGKSTTTGS 192
RKR N+ VI HVD GKST T S
Sbjct: 15 RKRNIRNMSVIAHVDHGKSTLTDS 38
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 136 INIVVIGHVDSGKSTTT 186
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 136 INIVVIGHVDSGKSTTT 186
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 118 ARKRTHINIVVIGHVDSGKSTTTGS 192
A + ++N+ IGH+D GK+T T +
Sbjct: 40 ATPKINVNVGTIGHIDHGKTTLTSA 64
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 118 ARKRTHINIVVIGHVDSGKSTTTGS 192
A + ++N+ IGH+D GK+T T +
Sbjct: 40 ATPKINVNVGTIGHIDHGKTTLTSA 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,128,586
Number of Sequences: 27780
Number of extensions: 115819
Number of successful extensions: 204
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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