Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_P02
(901 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 174 2e-44
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 141 1e-34
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 82 1e-16
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 63 5e-11
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 42 2e-04
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 38 0.002
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 37 0.004
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 36 0.008
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 35 0.018
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 34 0.032
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 33 0.042
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 33 0.042
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 33 0.042
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 31 0.29
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 28 1.6
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 28 2.1
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 28 2.1
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M... 28 2.1
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 28 2.1
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 2.7
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy... 27 2.7
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 27 3.6
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 6.3
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 6.3
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 26 6.3
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 6.3
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 26 8.4
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 26 8.4
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 8.4
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 8.4
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 174 bits (423), Expect = 2e-44
Identities = 80/94 (85%), Positives = 87/94 (92%)
Frame = +1
Query: 397 RGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEITDKLGL 576
+G+IFVVDSNDRERI EA EEL RML+EDELRDA+LL+FANKQDLPNAMNAAEITDKLGL
Sbjct: 86 QGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGL 145
Query: 577 HSLRNRNWYIQATCATSGDGLYXGLDWLSNQLKN 678
HSLR+R WYIQATCATSGDGLY GL+WLS LKN
Sbjct: 146 HSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179
Score = 170 bits (413), Expect = 3e-43
Identities = 78/87 (89%), Positives = 82/87 (94%)
Frame = +3
Query: 141 MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 320
MG + LF+ LFGK+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+N
Sbjct: 1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRN 60
Query: 321 ISFTVWDVGGQDKIRPLWRHYFQNTQG 401
ISFTVWDVGGQDKIRPLWRHYFQNTQG
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQG 87
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 141 bits (342), Expect = 1e-34
Identities = 64/83 (77%), Positives = 69/83 (83%)
Frame = +3
Query: 153 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 332
F+ F LF KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F
Sbjct: 9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFN 68
Query: 333 VWDVGGQDKIRPLWRHYFQNTQG 401
VWDVGGQDKIRPLWRHYF T+G
Sbjct: 69 VWDVGGQDKIRPLWRHYFTGTKG 91
Score = 116 bits (278), Expect = 6e-27
Identities = 54/93 (58%), Positives = 69/93 (74%)
Frame = +1
Query: 397 RGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEITDKLGL 576
+GLIFVVDS D RI EAR+EL R++S+ E+RD +LL+ ANKQDLP A++ A+ITD L L
Sbjct: 90 KGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQL 149
Query: 577 HSLRNRNWYIQATCATSGDGLYXGLDWLSNQLK 675
L++R W +Q TCA +GDGL GL WLS K
Sbjct: 150 DKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 81.8 bits (193), Expect = 1e-16
Identities = 35/73 (47%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Frame = +3
Query: 183 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDK 359
++E+R+L++GLD AGKTTIL K L E V + PT GF + T+E + + FT+WD+GGQ
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKT 72
Query: 360 IRPLWRHYFQNTQ 398
+R W++YF++T+
Sbjct: 73 LRNFWKNYFESTE 85
Score = 63.7 bits (148), Expect = 3e-11
Identities = 31/91 (34%), Positives = 53/91 (58%)
Frame = +1
Query: 403 LIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHS 582
+I+VVDS D R+ E R L +L E++L +L+ ANK D+ A+++ EI+ L +
Sbjct: 87 IIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISK 146
Query: 583 LRNRNWYIQATCATSGDGLYXGLDWLSNQLK 675
++ +W I + A +G + + WL+N LK
Sbjct: 147 YKSSHWRIFSVSALTGLNIKDAISWLANDLK 177
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 63.3 bits (147), Expect = 5e-11
Identities = 29/72 (40%), Positives = 41/72 (56%)
Frame = +3
Query: 186 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 365
K ++L +GLD AGKTT+L+ LK + PT+ E + N+ FT +D+GG + R
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR 78
Query: 366 PLWRHYFQNTQG 401
LWR YF G
Sbjct: 79 RLWRDYFPEVNG 90
Score = 48.0 bits (109), Expect = 2e-06
Identities = 23/60 (38%), Positives = 37/60 (61%)
Frame = +1
Query: 400 GLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLH 579
G++++VD D ER+ E++ EL +L+ +EL LI NK D P A++ E+ LGL+
Sbjct: 90 GIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAISEDELKAALGLY 149
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +3
Query: 192 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 356
+++L++G GK+ +L + + I TIG F + T+E K I +WD GQ+
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 357 KIRPLWRHYFQNTQG 401
+ R + Y++ G
Sbjct: 70 RFRTITTAYYRGAMG 84
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = +3
Query: 195 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 359
++L++G GK+ +L + + I TIG F + T E K + +WD GQ++
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 360 IRPLWRHYFQNTQG 401
R + Y++ G
Sbjct: 70 FRTITSSYYRGAHG 83
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 36.7 bits (81), Expect = 0.004
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +3
Query: 195 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQDK 359
++++VG GKTT + + GE I T+G V + + I F VWD GQ+K
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 360 IRPLWRHYF 386
+ L Y+
Sbjct: 71 LGGLRDGYY 79
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 35.9 bits (79), Expect = 0.008
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Frame = +3
Query: 195 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQ--- 353
++++VG A GKT++L LG T +PT+ N + V+ K++ +WD GQ
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEY 69
Query: 354 DKIRPL 371
+++RP+
Sbjct: 70 ERLRPM 75
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 34.7 bits (76), Expect = 0.018
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +3
Query: 195 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 359
+ +++G GK+ +L + E + + TIG T ++ K I +WD GQ++
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 360 IRPLWRHYFQNTQGS 404
R + Y++ G+
Sbjct: 72 YRAITSAYYRGAVGA 86
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 33.9 bits (74), Expect = 0.032
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Frame = +3
Query: 192 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--ISFTVWDVGGQ 353
+++ M+G + GKT+++ G + T+G N +T+ +N I+F++WD+GGQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQ 69
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 33.5 bits (73), Expect = 0.042
Identities = 17/78 (21%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +3
Query: 177 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWD 341
F ++ +++ +G + GKT+++ + + T TIG + + +E + + +WD
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 342 VGGQDKIRPLWRHYFQNT 395
GQ++ R L Y +++
Sbjct: 67 TAGQERFRSLIPSYIRDS 84
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 33.5 bits (73), Expect = 0.042
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Frame = +3
Query: 195 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVGGQ--- 353
++++VG A GKT +L G +PT+ N V VE ++I +WD GQ
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 354 DKIRPL 371
D++RPL
Sbjct: 68 DRLRPL 73
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 33.5 bits (73), Expect = 0.042
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 309 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGSNL 410
+ K I +WD GQ+K R + R+Y++ G+ L
Sbjct: 58 QQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVL 91
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 30.7 bits (66), Expect = 0.29
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 276 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 392
I T G + ET + +DVGGQ R W H F+N
Sbjct: 219 IKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFEN 257
Score = 26.6 bits (56), Expect = 4.8
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +3
Query: 180 GKKEMRILMVGLDAAGKTTILYKLKL 257
G ++++L++G +GKTTI+ +++L
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 195 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV---EYKNISFTVWDVGGQD 356
+++++G A GK++++ + + TIG F +T+ E ++ +WD GQ+
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 357 KIRPLWRHYFQN 392
+ + L Y++N
Sbjct: 76 RYKSLAPMYYRN 87
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -1
Query: 307 TVSTLKPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFLPKRPLNKFANIFPILNYY 128
T T++P V + ++S N +L VVL + + +IN+ L ++ FA +FPI Y
Sbjct: 191 TTETIRPHVRLHNSLSTNAALSASVVLASRLEKSINVFFFIL--FAVHWFA-LFPIFRKY 247
Query: 127 EYNF 116
+ F
Sbjct: 248 IHVF 251
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Frame = +3
Query: 180 GKKE--MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVW 338
GKK+ ++++++G GKT+I+ + + TIG + T V+ K ++ +W
Sbjct: 3 GKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLW 62
Query: 339 DVGGQDKIRPL 371
D GQ++ + L
Sbjct: 63 DTAGQERFQSL 73
>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 27.9 bits (59), Expect = 2.1
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Frame = +1
Query: 418 DSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQ------DLPNAMNAAEITDKLGL- 576
D ND + + R+ +++L + VL + KQ +L +A N E+ + L
Sbjct: 46 DENDSHSMATIKSHFERLKRDEQLLNGVLKKYDAKQEVLSPEELRDAQNFLEMQEANSLD 105
Query: 577 HSLRNRNWYIQATCATSGDGLYXG--LDWLSNQLKN-AXR*PYVRQLADKS 720
+S+R N ++ AT D Y L ++N++ A P++ Q+ K+
Sbjct: 106 NSIRGTNELLERAYATREDFDYQNSVLGNVTNRINGAAMSIPFINQILRKT 156
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +3
Query: 195 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNISFTVWDVGGQDK 359
+I+++G AAGKT++L G PTI N V+ +I ++WD GQ++
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEE 73
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 468 PHELFACLADTFPIVTVY-YED*TPVYFGNNAST 370
P E+ +CL+ PI ++ Y+D P YFG+ T
Sbjct: 288 PQEILSCLSQ-IPIKFIFFYQDVRPPYFGSYTKT 320
>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 177 FGKKEMRILMVG-LDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 341
F K+ RIL VG L + + K GE+ +P +GF ++++ +N FT+++
Sbjct: 237 FLKEAYRILKVGGLLWVAEIKSRFSDKSGEVFAKELPKLGFETKSIQLQNKMFTLFE 293
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 183 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY 314
KK + ++G +GKT++ +L E TT+P+I N +Y
Sbjct: 35 KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPNEAVWKY 78
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 198 ILMVGLDAAGKTTILYKLKL 257
I+MVGL +GKTT KL L
Sbjct: 104 IMMVGLQGSGKTTTCSKLAL 123
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 186 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 287
KE+R+++ G GK++++ L + VT+IP +
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKV 35
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 26.2 bits (55), Expect = 6.3
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -1
Query: 439 YVPDRYCLLRRLDPCV 392
Y+ +CL+R+ DPC+
Sbjct: 288 YITQLFCLVRQFDPCI 303
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 162 LFKGLFGKKEMRILMVGLDAAGKTTI 239
L K ++GK+ + I+ +G AGK+T+
Sbjct: 229 LLKDMYGKEHVNIVFIGHVDAGKSTL 254
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 282 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 392
T+G + + ++ ++DVGGQ R W + F+N
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFEN 215
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 377 PPQWSDFVLASNIPHSKTNVFVFY 306
PP+ SDF++ S H + N F F+
Sbjct: 257 PPEVSDFLIKSFYGHVQANFFFFH 280
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 8.4
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 427 DRERIGEAREELMRMLSEDELRDAVL----LIFANKQDLPNAMNAAEITDKLGLHSLRNR 594
D E+ + REE +R+L E +DA + + +DL + ++ A+++ K +S
Sbjct: 405 DEEKKKKEREEQVRLLQESADKDAEMNEASTATSENEDLKDDLSLADLSSKKTANSQATE 464
Query: 595 N 597
N
Sbjct: 465 N 465
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 25.8 bits (54), Expect = 8.4
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 647 PSYSPSPEVAHVAWMYQLRLRSECRPSL-SVISAAFIAFGRSCLFA 513
P+ SP PEV+H W+ L P L S + IAF CL A
Sbjct: 16 PNSSPDPEVSHKLWVSSLNKFQYTLPLLISNFAGLGIAF-IYCLIA 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,732,497
Number of Sequences: 5004
Number of extensions: 78367
Number of successful extensions: 276
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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