Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_O24
         (951 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual           59   8e-10
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    26   6.8  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    26   9.0  

>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 312

 Score = 59.3 bits (137), Expect = 8e-10
 Identities = 24/68 (35%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
 Frame = +2

Query: 311 KYIDIGANLTDDMYKGVYNGSRKHEPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELS 490
           ++ DIG N TD +++G+Y+   KH  D D ++ RA   G+ K+++TG ++E+S++A+ L+
Sbjct: 13  RFYDIGYNATDPVFRGIYHEKLKHPDDFDSIISRAKAVGVEKMMITGDNVENSEEALNLA 72

Query: 491 RT-DCAVS 511
              +C  S
Sbjct: 73  TNYECFTS 80


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 139 LKCCFKLYTLHISEHYDQFNEQ 204
           L CCF+ +    S+HY ++ EQ
Sbjct: 322 LACCFESHFFAFSQHYPRYLEQ 343


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -3

Query: 94  INNNDMAVCNALAH 53
           +NNN+M++ NALAH
Sbjct: 709 VNNNNMSIQNALAH 722


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,033,791
Number of Sequences: 5004
Number of extensions: 38337
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)