Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_O24
         (951 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0412 + 3151059-3151090,3151374-3151833,3151899-3151979,315...    39   0.005
07_01_0409 + 3143838-3144017,3144345-3144461,3144659-3144739,314...    31   1.8  

>07_01_0412 +
           3151059-3151090,3151374-3151833,3151899-3151979,
           3152682-3152752,3152827-3152937,3153149-3153231,
           3153489-3153705,3154169-3154252,3154423-3154498
          Length = 404

 Score = 39.1 bits (87), Expect = 0.005
 Identities = 14/31 (45%), Positives = 23/31 (74%)
 Frame = +2

Query: 353 KGVYNGSRKHEPDLDVVLERAWTSGINKIIV 445
           +G+Y+G + H  D+  VL RAW +G+++IIV
Sbjct: 11  EGIYHGKQCHAADIPAVLARAWAAGVDRIIV 41



 Score = 30.7 bits (66), Expect = 1.8
 Identities = 17/40 (42%), Positives = 28/40 (70%)
 Frame = +2

Query: 392 LDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRTDCAVS 511
           L+++L   W SG     VTGGSL++S++A+E++ TD  +S
Sbjct: 69  LNLLLSLVW-SGRK---VTGGSLKESREALEIAETDGELS 104


>07_01_0409 +
           3143838-3144017,3144345-3144461,3144659-3144739,
           3145335-3145405,3145479-3145589,3146194-3146382,
           3146643-3146670
          Length = 258

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/25 (48%), Positives = 21/25 (84%)
 Frame = +2

Query: 443 VTGGSLEDSKKAIELSRTDCAVSFY 517
           VTGGSL++S++A+E++ TD  +S +
Sbjct: 61  VTGGSLKESREALEIAETDGELSCF 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,152,647
Number of Sequences: 37544
Number of extensions: 208483
Number of successful extensions: 426
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)