Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_O24
         (951 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY303576-1|AAP57298.1|  286|Caenorhabditis elegans cell death-re...    36   0.032
AF036694-6|AAB88340.1|  286|Caenorhabditis elegans Cell-death-re...    36   0.032

>AY303576-1|AAP57298.1|  286|Caenorhabditis elegans cell
           death-related nuclease 2 protein.
          Length = 286

 Score = 36.3 bits (80), Expect = 0.032
 Identities = 24/62 (38%), Positives = 37/62 (59%)
 Frame = +2

Query: 302 ALRKYIDIGANLTDDMYKGVYNGSRKHEPDLDVVLERAWTSGINKIIVTGGSLEDSKKAI 481
           AL + +DIGANL          G   ++ DL+ VL+RA  +G++KI+VTG S + S +  
Sbjct: 2   ALYELVDIGANL----------GHPSYQKDLNDVLDRAKQAGLSKIMVTGTSEKISHECA 51

Query: 482 EL 487
           +L
Sbjct: 52  DL 53


>AF036694-6|AAB88340.1|  286|Caenorhabditis elegans
           Cell-death-related nuclease protein2 protein.
          Length = 286

 Score = 36.3 bits (80), Expect = 0.032
 Identities = 24/62 (38%), Positives = 37/62 (59%)
 Frame = +2

Query: 302 ALRKYIDIGANLTDDMYKGVYNGSRKHEPDLDVVLERAWTSGINKIIVTGGSLEDSKKAI 481
           AL + +DIGANL          G   ++ DL+ VL+RA  +G++KI+VTG S + S +  
Sbjct: 2   ALYELVDIGANL----------GHPSYQKDLNDVLDRAKQAGLSKIMVTGTSEKISHECA 51

Query: 482 EL 487
           +L
Sbjct: 52  DL 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,943,722
Number of Sequences: 27780
Number of extensions: 203011
Number of successful extensions: 446
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2465154230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)