Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_O23
         (931 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    26   6.6  

>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = +1

Query: 631 APSCALLFRPCRFXGYLSAFLPSGSVALSHSSRCRYLSSVXVVRSKLAVCTNPXSADXAL 810
           A S +L  +P R+   L  F+   +  LSH S C+ L      R    V   P +    L
Sbjct: 50  ASSTSLASKPARYSKPLGLFVLDTNFLLSHLSLCQNLIEFLTARCPRLVVVLPWTVLQEL 109

Query: 811 IG 816
            G
Sbjct: 110 DG 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,387
Number of Sequences: 5004
Number of extensions: 51572
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)