Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_O17
         (947 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0002 - 24849189-24849825,24850267-24850328                       31   1.0  
02_04_0382 - 22501041-22501279,22501717-22501810                       30   2.3  
02_01_0611 - 4567839-4568144,4568280-4569209,4569301-4569566,456...    29   4.1  
07_03_1140 - 24258627-24258849,24259967-24260089,24260200-242609...    29   5.4  
01_03_0005 + 11568545-11569119,11569179-11569191                       26   8.9  
03_05_0161 + 21400580-21401695                                         28   9.4  

>02_05_0002 - 24849189-24849825,24850267-24850328
          Length = 232

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +2

Query: 794 KKXPPXXXGGGGGXXXPPPPP 856
           KK  P    GGGG   PPPPP
Sbjct: 202 KKPQPADTSGGGGHPHPPPPP 222



 Score = 28.3 bits (60), Expect = 9.4
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 792 KKKXPXPXGGGGGXXXXPPPP 854
           KK  P    GGGG    PPPP
Sbjct: 202 KKPQPADTSGGGGHPHPPPPP 222



 Score = 28.3 bits (60), Expect = 9.4
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 794 KKXPPXXXGGGGGXXXPPPPP 856
           K  P    GGGG    PPPPP
Sbjct: 203 KPQPADTSGGGGHPHPPPPPP 223


>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 803 PPXXXGGGGGXXXPPPPP 856
           P    GGGGG   PPPPP
Sbjct: 85  PSPYYGGGGGYGKPPPPP 102



 Score = 29.1 bits (62), Expect = 5.4
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -3

Query: 855 GGGGGXXXPPPPP 817
           GGGGG   PPPPP
Sbjct: 90  GGGGGYGKPPPPP 102


>02_01_0611 -
           4567839-4568144,4568280-4569209,4569301-4569566,
           4569662-4569970,4570497-4570647,4570958-4571012,
           4571137-4571512,4571560-4571797,4571878-4572096,
           4572629-4572910
          Length = 1043

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 803 PPXXXGGGGGXXXPPPPP 856
           PP    GGGG   PPPPP
Sbjct: 57  PPMGRLGGGGLLVPPPPP 74


>07_03_1140 -
           24258627-24258849,24259967-24260089,24260200-24260921,
           24260945-24261073,24261484-24261714
          Length = 475

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -3

Query: 855 GGGGGXXXPPPPP 817
           GGGGG   PPPPP
Sbjct: 53  GGGGGGWPPPPPP 65



 Score = 29.1 bits (62), Expect = 5.4
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +2

Query: 818 GGGGGXXXPPPPP 856
           GGGGG   PPPPP
Sbjct: 53  GGGGGGWPPPPPP 65


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 25.8 bits (54), Expect(2) = 8.9
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 816 GGGGGXXXXPPPP 854
           GGGGG    PPPP
Sbjct: 131 GGGGGAYPTPPPP 143



 Score = 21.0 bits (42), Expect(2) = 8.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 804 PXPXGGGGG 830
           P P GGGGG
Sbjct: 114 PPPTGGGGG 122


>03_05_0161 + 21400580-21401695
          Length = 371

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 806 PXXXGGGGGXXXPPPPP 856
           P    GGGG   PPPPP
Sbjct: 12  PRKGAGGGGTTTPPPPP 28


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,062,825
Number of Sequences: 37544
Number of extensions: 208329
Number of successful extensions: 2235
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1596
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)