Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_O16
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    62   1e-10
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    31   0.31 
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    29   0.71 
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   2.9  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   3.8  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    26   8.7  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 17/164 (10%)
 Frame = +2

Query: 275 YSFKGIPYAQPPIGKLRFKAPLP-PLPWDGIRDASEHGPVCPQ--YDLSVSKL----VEG 433
           + F GI YA+PP+GKLR++ P+     +D   D ++   +CPQ  Y+   +++     + 
Sbjct: 19  HRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQPFYNNRKNQVRNPDFKY 78

Query: 434 SEDCLFLNIYSKSIQQNAK-IPVMVNIHGGSFMYGSGNTDFAFGPEFLIQHD-----VIL 595
            EDCLFLNI+  + ++ A+  PV+  IHGG    G+        P+ L Q D      IL
Sbjct: 79  DEDCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGNPLHYRQCDPQDL-QADGSPAKFIL 137

Query: 596 VTLNYRLEVLGFLS----LDIPEVPGNAGIKDQVAALRWIKDNI 715
           V+  +RL + GFL+    L+      N G  DQ   L W   +I
Sbjct: 138 VSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHI 181


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 494 PVMVNIHGGSFMYGSGNTDFAFGPEFLIQHDVILVTLNYRL 616
           P  +  HGG ++ G+ NT+ +F      Q   ++V ++YRL
Sbjct: 101 PCFLWFHGGGWVLGNINTENSFATHMCEQAKCVVVNVDYRL 141


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +2

Query: 257 PDGTPYYSFKGIPYAQPPIGKLRFKAPL----PPLPWDGIRDASEHGPVCPQYDLSVSK 421
           P G PYY +   P    P G L    PL    P +P+ G  D  + G   P++  +VS+
Sbjct: 132 PAGAPYYMYPNAPAQFVPPGGLPLGTPLDASTPAVPYYGAPDQQQMGQ-RPEFAQNVSQ 189


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +2

Query: 185 RSMIKKDPIITVSQGQLKGTIKN---LPDGTPYYSFKGIPYAQPP 310
           RS +  +P + ++   L+G + N   +P GTP  S +G   + PP
Sbjct: 214 RSAVVPNPSLPLNPSVLQGQVMNNPTIPKGTPSTSIEGAKTSIPP 258


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 401  YDLSVSKLVEGSEDCLFLNIYSKSIQQNAKIPVM 502
            + +  + L+E SED LF+  Y + + + A+ P++
Sbjct: 1040 FAILANSLLEPSEDILFIGNYGEKLNREAENPII 1073


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 437 EDCLFLNIYSKSIQQNAKIPVMVNIHGGSFMYGSGNTD 550
           E C F   YS S  Q+   PV  NIH  S      N++
Sbjct: 41  EKCTFNKYYSSSQYQHTGRPVGGNIHSSSNQQRQKNSE 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,919,301
Number of Sequences: 5004
Number of extensions: 87224
Number of successful extensions: 190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)