Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_O14
         (912 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   8.9  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 433 PRCCLRNWNRRRSHHRDPVHAFQLWYP 513
           P CC + W+ ++S  R  +++  L YP
Sbjct: 364 PNCCGK-WSSQKSEPRRSIYSSLLRYP 389


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 402 LPCPTSMLRSSTMLSQELEPTKKPS 476
           LPC   M R S    +E + ++KPS
Sbjct: 340 LPCILRMSRPSDKEEREAQKSQKPS 364


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 893 QEPTCSYAFGNSKHALXKVP 834
           ++  CS   GN  HAL K P
Sbjct: 164 EDVICSTPIGNLSHALLKDP 183


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 881 CSYAFGNSKHALXKVP 834
           CS   GN  HAL K P
Sbjct: 221 CSTPIGNLSHALLKDP 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,741
Number of Sequences: 438
Number of extensions: 3812
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)