Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_O11
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.77 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   2.4  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   9.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   9.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 639 GXXPPPPPPPXXXGGG 686
           G  PPPPPPP   G G
Sbjct: 759 GGPPPPPPPPGVAGAG 774



 Score = 29.1 bits (62), Expect = 0.77
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 639 GXXPPPPPPPXXXGGG 686
           G  PPPPPPP    GG
Sbjct: 774 GPPPPPPPPPAVSAGG 789



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 639 GXXPPPPPPPXXXGGGGG 692
           G  PPPPPPP      GG
Sbjct: 772 GAGPPPPPPPPPAVSAGG 789



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 648 PPPPPPPXXXGGGG 689
           PPPPPPP    G G
Sbjct: 761 PPPPPPPPGVAGAG 774



 Score = 23.4 bits (48), Expect(2) = 4.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 651 PPPPPPXXXGGGGGG 695
           PPPPPP       GG
Sbjct: 775 PPPPPPPPPAVSAGG 789



 Score = 23.0 bits (47), Expect(2) = 6.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 654 PPPPPXXXGGGGGG 695
           PPPPP   G  G G
Sbjct: 761 PPPPPPPPGVAGAG 774



 Score = 21.0 bits (42), Expect(2) = 4.9
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 648 PPPPPP 665
           PPPPPP
Sbjct: 732 PPPPPP 737



 Score = 21.0 bits (42), Expect(2) = 6.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 651 PPPPPP 668
           PPPPPP
Sbjct: 732 PPPPPP 737


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 648 PPPPPPPXXXGGGGG 692
           PPPPPPP      GG
Sbjct: 946 PPPPPPPPLVSAAGG 960



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 648 PPPPPPPXXXGGGGGG 695
           PPPPPPP       GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 639 GXXPPPPPPP 668
           G  PPPPPPP
Sbjct: 303 GGLPPPPPPP 312



 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 639 GXXPPPPPPP 668
           G  PPPPPPP
Sbjct: 304 GLPPPPPPPP 313


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 639 GXXPPPPPPP 668
           G  PPPPPPP
Sbjct: 7   GNPPPPPPPP 16


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,752,432
Number of Sequences: 5004
Number of extensions: 21487
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)