Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_O10
         (925 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.0  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   5.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 388 PISYFWLCLAMMCLCSAYIFM 326
           P+SY     A M +C+ ++FM
Sbjct: 300 PVSYLKAVDAFMSVCTVFVFM 320


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +2

Query: 401 QAGHEQVRRHAPPRVREDYERLQQNCQTQQESVHEGWER 517
           Q+ H Q +  A P+ ++  ++ Q   Q QQ+   +  +R
Sbjct: 818 QSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQR 856


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 534 ISPANVKLPEQVDWRK 581
           + P+N KLP   +W+K
Sbjct: 385 LDPSNRKLPAPANWKK 400


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 426 DMLHHEFVKTMNGFNKTAKHNKNLYMKGG 512
           D   H+ +   NG + T  HN+ L   GG
Sbjct: 395 DSARHQRIGGCNGLHTTTAHNRFLGGIGG 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,829
Number of Sequences: 438
Number of extensions: 4793
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)