Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_O09
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.17 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.40 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.40 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.70 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.2  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    28   2.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 19/69 (27%), Positives = 23/69 (33%)
 Frame = +1

Query: 709 IXTXPPPPPXXKXKTPPPXXXGAPPPPXXXKKKGVXXXXXXXXXXXXXPPXTXXKNXPPP 888
           + + PPPPP     TP P     PPP                      PP       PPP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP------PPPP 782

Query: 889 PQXXXGGAK 915
           P    GG++
Sbjct: 783 PAVSAGGSR 791


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 721 PPPPPXXKXKTPPPXXXGAPPPPXXXKKK 807
           PPPPP  +  + PP     PPPP   KK+
Sbjct: 12  PPPPPGFEPPSQPP----PPPPPGYVKKR 36



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +3

Query: 819 PXXPPPXXXXXPPXDPXKKXPPPTPXG 899
           P  PPP     PP  P    PPP P G
Sbjct: 9   PPPPPPPPGFEPPSQP----PPPPPPG 31


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
 Frame = +1

Query: 721 PPPPPXXKXKTPPPXXXGA-----PPPPXXXKKKGVXXXXXXXXXXXXXPPXTXXKNXPP 885
           PPPPP  + +  PP   G+     PPPP   +                 PP       PP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAA--------GSIPLPPQGRSAPPPP 364

Query: 886 PPQXXXGGAKXXP 924
           PP+      +  P
Sbjct: 365 PPRSAPSTGRQPP 377


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 21/57 (36%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
 Frame = -2

Query: 908 PPXSXWGGGGXFFXWVXGGXXXXXGGGXXGXGTPFFFXXXGG-GGAPXXXGGGVFXF 741
           PP    G GG  F    G      G G  G G   F    GG GG P   GGG+  F
Sbjct: 200 PPPGPGGFGG--FGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 20/48 (41%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = -2

Query: 890 GGGGXFFXWVXGGXXXXXGG-GXXGXGTPFFFXXXGG-GGAPXXXGGG 753
           GG G F     GG     GG G  G G   F    GG GG P   GGG
Sbjct: 221 GGHGGF----GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 730  PPXXKXKTPPPXXXGAPPPP 789
            PP     TPPP     PPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPP 1718



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
 Frame = +1

Query: 721  PPPPPXXKXKTP--PPXXXG---APPPP 789
            PPPPP      P  PP   G   APPPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +1

Query: 709 IXTXPPPPPXXKXKTPPPXXXGAPPP 786
           + T PPPPP        P     PPP
Sbjct: 904 VSTLPPPPPTASMTASAPAIASPPPP 929


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.139    0.459 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,986
Number of Sequences: 5004
Number of extensions: 24921
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)