Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_O07
(940 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 165 3e-41
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 155 4e-38
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 92 7e-19
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 30 3.1
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 9.3
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 165 bits (402), Expect = 3e-41
Identities = 86/193 (44%), Positives = 118/193 (61%)
Frame = +2
Query: 197 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 376
K VPESVLK + L + A++ ++ IF RA+QY +EY +E++ +
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66
Query: 377 RLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINXGVFVRLNKAT 556
+L R+AR +G +YV EAKL FV+RIRGIN + PK RK+LQL RLRQI GVF+++NKAT
Sbjct: 67 QLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKAT 126
Query: 557 VNMLRXAEPYXAWGYPNLKSVP*VXIQTWIXQAEWTXVYQSLPTALFEKRLHKHNXICVE 736
+NMLR EPY A+GYPNLKSV + + + + + E+ L KH+ IC+E
Sbjct: 127 INMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRI-PLQNNKVIEEGLGKHDIICIE 185
Query: 737 DLXPEIFXXGXXF 775
DL EI G F
Sbjct: 186 DLVHEIMTVGPHF 198
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 789 FLWPFKLXNPTGGWAPK-HXYVDG 857
FLWPFKL P GG K + YV+G
Sbjct: 204 FLWPFKLKAPLGGLKKKRNHYVEG 227
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 155 bits (377), Expect = 4e-38
Identities = 82/194 (42%), Positives = 117/194 (60%), Gaps = 5/194 (2%)
Frame = +2
Query: 209 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 388
VPESVL+ + + + +I+ ++ IF RA+QY +EY +E++ ++L R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
Query: 389 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINXGVFVRLNKATVNML 568
+AR +G +YV E KL FV+RIRGIN + PK RK+LQL RLRQI GVF+++NKAT+NML
Sbjct: 70 EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 129
Query: 569 RXAEPYXAWGYPNLKSVP*VXIQTWIXQAEWTXVYQSLPTALFE-----KRLHKHNXICV 733
R EPY A+GYPNLKSV + + + + + + E + L KH+ IC+
Sbjct: 130 RRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICI 189
Query: 734 EDLXPEIFXXGXXF 775
EDL EI G F
Sbjct: 190 EDLVHEIMTVGPHF 203
Score = 34.7 bits (76), Expect = 0.11
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Frame = +3
Query: 603 PT*RVSRELXYKRGFXKLSGX--PYTNHF---QXPCLRRG-SINXXXXXXXXXXXXXXXX 764
P + REL YKRG+ KL+ P TN+ + CL +G +
Sbjct: 141 PNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICIEDLVHEIMTVG 200
Query: 765 EXXSVRE*FLWPFKLXNPTGGWAPK-HXYVDG 857
FLWPFKL P GG K + YV+G
Sbjct: 201 PHFKEANNFLWPFKLKAPLGGLKKKRNHYVEG 232
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 91.9 bits (218), Expect = 7e-19
Identities = 62/201 (30%), Positives = 98/201 (48%), Gaps = 3/201 (1%)
Frame = +2
Query: 182 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 361
+E +++LP V E+VLK + +R + KR E +V+E+R K
Sbjct: 3 EEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNK 62
Query: 362 ERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGINQVSPKVRKVLQLFRLRQINXGV 532
E D +R+ + + R P E +KL F IRI G + P +R++L+ RL Q+ GV
Sbjct: 63 ELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGV 120
Query: 533 FVRLNKATVNMLRXAEPYXAWGYPNLKSVP*VXIQTWIXQAEWTXVYQSLPTALFEKRLH 712
F++ AT+ L EP+ +G+PNLK+V + + + + L EK L
Sbjct: 121 FLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLD-KEPFPLTSNDLIEKALG 179
Query: 713 KHNXICVEDLXPEIFXXGXXF 775
++ IC+EDL EI G F
Sbjct: 180 EYGIICLEDLVHEIASVGPHF 200
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 29.9 bits (64), Expect = 3.1
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 275 TLKRRSSAIKKKREIF--KRAEQYVKE-YRIKERDEIRLARQARNRGNYY 415
TL+ R+ IK KRE+F KR E ++E ++ + E+ + A NR +
Sbjct: 149 TLETRTDPIKLKREVFRRKRKEHRIQELLQVDKEAELHMRNVATNRSRNF 198
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 420 PGKPNWHLSSESVVSTKFHRRSVKFCNCLDCAK 518
PG+ NW S +V TK R+S + N +D A+
Sbjct: 100 PGQANWFPDSNLLVDTKGRRQSRRIKNLMDEAE 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,185,058
Number of Sequences: 37544
Number of extensions: 404222
Number of successful extensions: 759
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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