Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_O07
         (940 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   172   4e-43
U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical pr...    31   1.6  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  172 bits (418), Expect = 4e-43
 Identities = 89/195 (45%), Positives = 122/195 (62%)
 Frame = +2

Query: 191 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 370
           +KK+P VPE+VLK             Q  +   +   +KK + FKRAE+YV+EYR  +++
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63

Query: 371 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINXGVFVRLNK 550
            +RL R+A  +G++YVP E K+AFV+RIRGINQ+ PK RK LQ+ RLRQIN GVFV+LNK
Sbjct: 64  GLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNK 123

Query: 551 ATVNMLRXAEPYXAWGYPNLKSVP*VXIQTWIXQAEWTXVYQSLPTALFEKRLHKHNXIC 730
           AT+ +LR  EPY AWGYPN K++  +  +    + +   V       + E+ L K N IC
Sbjct: 124 ATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRV-PITDNTIVEQSLGKFNIIC 182

Query: 731 VEDLXPEIFXXGXXF 775
           +EDL  EI   G  F
Sbjct: 183 LEDLAHEIATVGPHF 197



 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
 Frame = +3

Query: 603 PT*RVSRELXYKRGFXKLSGX--PYTNHFQXPCLRRGSINXXXXXXXXXXXXXXXXEXXS 776
           P  +   +L YKRG+ K+ G   P T++        G  N                    
Sbjct: 141 PNNKTIHDLLYKRGYAKVDGNRVPITDNTIVE-QSLGKFNIICLEDLAHEIATVGPHFKE 199

Query: 777 VRE*FLWPFKLXNPTGGWAPK-HXYVDG 857
               FLWPFKL NPTGGW  K + +V+G
Sbjct: 200 ATN-FLWPFKLNNPTGGWTKKTNHFVEG 226


>U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical
           protein W06A11.4 protein.
          Length = 347

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +3

Query: 303 RRRGKSSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKF 473
           ++R K SR     SR  ASR  +K     K    A +T P +PN +  S S  S ++
Sbjct: 21  KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRY 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,604,158
Number of Sequences: 27780
Number of extensions: 340154
Number of successful extensions: 761
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)