Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_O04
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.8  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   8.7  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 25/100 (25%), Positives = 40/100 (40%)
 Frame = +2

Query: 272 SSSQCTVKDSQT*PRTMWPPSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRS 451
           +S+ CT   S     +    +P T     +S +  S+  P   T +T +  S   T S S
Sbjct: 225 TSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTS 284

Query: 452 ETVQTAPRVTGSSMRKKAKGKSPTTALKNPT*PSRSATKT 571
            T  T+   TG+S         PT+     T P  ++T +
Sbjct: 285 CTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSS 324



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 26/100 (26%), Positives = 40/100 (40%)
 Frame = +2

Query: 272 SSSQCTVKDSQT*PRTMWPPSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRS 451
           +S+ CT   S   P T    +P T     +S +  S   P   T +T +  S   + S S
Sbjct: 281 TSTSCTTSTSI--PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTS 338

Query: 452 ETVQTAPRVTGSSMRKKAKGKSPTTALKNPT*PSRSATKT 571
            T  T+   TG+S         PT+     T P  ++T +
Sbjct: 339 CTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSS 378


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 23/78 (29%), Positives = 34/78 (43%)
 Frame = +2

Query: 257 VSGVLSSSQCTVKDSQT*PRTMWPPSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSAGS 436
           +S  +SSS   V+       T    +  T  +  ++NT   + R  KPT TT S   A +
Sbjct: 307 ISSTISSSSFIVESPSVALSTS-STTTITNASTPAANT--IISRSSKPTDTTNSISFANT 363

Query: 437 TVSRSETVQTAPRVTGSS 490
           T   + T  T+P    SS
Sbjct: 364 TPENTSTQITSPTAVNSS 381


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +1

Query: 340 NPEGFKVFKYMKILEEAMQTDQDNLIEKVRGIYGFKVRNGPDGAEG 477
           NP G K FK + +  E +   Q   +    GI        P GAEG
Sbjct: 38  NPNGEKKFKEISLAYEVLSDPQRRKLYDQYGITEGNAAPPPPGAEG 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,175,722
Number of Sequences: 5004
Number of extensions: 61432
Number of successful extensions: 181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)