Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_O04
(927 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0762 + 5699619-5699744,5699831-5699891,5699979-5700078,570... 46 4e-05
02_05_0855 - 32271631-32271712,32271823-32271922,32272012-322720... 44 1e-04
01_03_0268 + 14436631-14436756,14436866-14436929,14437001-144371... 42 7e-04
04_03_0068 - 10631827-10631947,10632037-10632112,10632152-106330... 31 1.7
03_01_0546 - 4089502-4089661,4089959-4090025,4091243-4091684 31 1.7
03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798 29 6.9
03_01_0318 - 2495617-2497788 29 6.9
06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,833... 28 9.2
>06_01_0762 +
5699619-5699744,5699831-5699891,5699979-5700078,
5700436-5700560,5700631-5700706,5701122-5701164
Length = 176
Score = 46.0 bits (104), Expect = 4e-05
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Frame = +1
Query: 391 MQTDQD-NLIEKVRGIYGFKVRNGPDGA-EGYWVINAKEGK-GKVTYNGSEKPDVTFTIS 561
M TD ++ +KV +Y F + G E +V++ K+G+ K Y G KPD TF+ +
Sbjct: 19 MATDAGKDIAKKVGLVYQFNIAPKKIGVDEEIFVVDLKKGEVTKGPYEG--KPDATFSFT 76
Query: 562 DEDVXDLISGKLNPQKAFFQ 621
D D + +GK+NPQ AF +
Sbjct: 77 DSDFLSIATGKMNPQIAFIR 96
>02_05_0855 -
32271631-32271712,32271823-32271922,32272012-32272072,
32272169-32272294
Length = 122
Score = 44.4 bits (100), Expect = 1e-04
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +1
Query: 412 LIEKVRGIYGFKVRNGPDGA-EGYWVINAKEGK-GKVTYNGSEKPDVTFTISDEDVXDLI 585
L+EK+ +Y + E +V++ K+G K Y G KPD TF+ +D+D +
Sbjct: 27 LVEKIGFVYQLNISPKKLAFDEEVFVVDLKKGVVSKGPYEG--KPDATFSFTDDDFLAIS 84
Query: 586 SGKLNPQKAF 615
SGKLNPQ AF
Sbjct: 85 SGKLNPQMAF 94
>01_03_0268 +
14436631-14436756,14436866-14436929,14437001-14437100,
14437187-14437478
Length = 193
Score = 41.9 bits (94), Expect = 7e-04
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +1
Query: 412 LIEKVRGIYGFKVRNGPDG--AEGYWVINAKEGK-GKVTYNGSEKPDVTFTISDEDVXDL 582
L+E + +Y + G E + V++ K+G K Y G KPD TF+ +D+D +
Sbjct: 27 LVEMIGFVYQLNISPKKLGFDEEVFIVVDLKKGVVSKGPYEG--KPDATFSFTDDDFLAI 84
Query: 583 ISGKLNPQKAF 615
SGKLNPQ F
Sbjct: 85 SSGKLNPQMVF 95
>04_03_0068 -
10631827-10631947,10632037-10632112,10632152-10633021,
10650975-10651599
Length = 563
Score = 30.7 bits (66), Expect = 1.7
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Frame = +1
Query: 265 GAVVITMYRKGFSNVTPNNVAAVADN---PEGFKVFKYM------KILEEAMQTDQDNLI 417
G+V M + G ++V NV V PE K F+ M + L MQT + L+
Sbjct: 13 GSVKEKMLKLGLTDVNEGNVVPVDPEKFTPEQKKEFEAMLQQAQDQFLNSFMQTRKGTLV 72
Query: 418 EKVRGIYGFKVRNGPDGAEGYWVINAKEGKGKVTYNGSEKPDV 546
+K Y KV G ++K+G GK NGS +P +
Sbjct: 73 QK----YKIKVVADDPGTS-----SSKDGDGKQAPNGSAQPSI 106
>03_01_0546 - 4089502-4089661,4089959-4090025,4091243-4091684
Length = 222
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 430 GIYGFKVRNGPDGAEGYWVINAKEGKGKVTYNGSEKPDVTFTISDEDVXDLISGK 594
G+ G K+ A W +A++G G+ Y GS PD F D D ++ K
Sbjct: 103 GLAGLKMARAASTASR-WRASAEQGSGEDDYGGSVVPDAGFLGGGRDGGDFVNLK 156
>03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798
Length = 289
Score = 28.7 bits (61), Expect = 6.9
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Frame = +2
Query: 329 PSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRSETVQ-TAPRVTGSSMRKKA 505
P P K +S R KPT T +K S + E Q +AP T S K+A
Sbjct: 87 PKPRKHKGAKSEKPHRVSGEGEKPTPTKKKKKKESSKEPKREKQQASAPMSTPSKKNKEA 146
Query: 506 KGKSPTTALKNPT 544
K + PT
Sbjct: 147 KRDTGGAGKPTPT 159
>03_01_0318 - 2495617-2497788
Length = 723
Score = 28.7 bits (61), Expect = 6.9
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 99 IYYYLEILSLSCRISNSRSRLYHQRINSDSEFR 197
++Y++++LS S ++ S RL HQR ++ R
Sbjct: 136 VFYWMQLLSASACVALSLVRLVHQRYGGSADAR 168
>06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,
8332461-8332619,8333246-8333372,8333444-8333775,
8333859-8334593,8334735-8335073,8335160-8335313,
8335405-8336154,8336242-8336372
Length = 1565
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 364 KYMKILEEAMQTDQDNLIEKVRGIYGFKVRNGPDGAE 474
+Y K L E++ + + KV G+Y RN DG E
Sbjct: 1367 EYFKYLTESVSSGSPTCLAKVLGLYQVAARNLRDGKE 1403
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,976,724
Number of Sequences: 37544
Number of extensions: 427037
Number of successful extensions: 1023
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -