Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_O02
(1014 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protei... 31 1.3
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 30 3.0
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 29 5.3
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 29 5.3
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 28 9.2
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 9.2
>U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protein
139 protein.
Length = 310
Score = 31.1 bits (67), Expect = 1.3
Identities = 24/64 (37%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = +1
Query: 397 PGKXGXPXGXXXGSLPPGXXXL--AXXGRGXRXHSXQGGXXGSPXNSGATPGNXPXPQXA 570
PGK G P G GS PG A G G Q G G P +S + PG P P
Sbjct: 175 PGKPGAP-GVGGGSGAPGAPGPKGAPGGPGQPGRDGQPGQAGQPGSSSSEPGQ-PGPN-G 231
Query: 571 XPXP 582
P P
Sbjct: 232 QPGP 235
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical
protein C09G5.5 protein.
Length = 317
Score = 29.9 bits (64), Expect = 3.0
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = +1
Query: 394 PPGKXGXPXGXXXGSLP-PGXXXLAXXGRGXRXHSXQGGXXGSPXNSGATPGN 549
P G G P GS P P G H Q G G+P N GA PG+
Sbjct: 212 PQGPPGAPGQPGSGSTPGPAGPPGPPGPNGQPGHPGQDGQPGAPGNDGA-PGS 263
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 29.5 bits (63), Expect = 4.0
Identities = 20/52 (38%), Positives = 22/52 (42%)
Frame = +1
Query: 394 PPGKXGXPXGXXXGSLPPGXXXLAXXGRGXRXHSXQGGXXGSPXNSGATPGN 549
PPG G P G P G A G H Q G G+P N G TPG+
Sbjct: 217 PPGAPGQP-GSGNAPGPAGPPGPAGPN-GQPGHPGQDGQPGAPGNDG-TPGS 265
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 29.5 bits (63), Expect = 4.0
Identities = 20/52 (38%), Positives = 22/52 (42%)
Frame = +1
Query: 394 PPGKXGXPXGXXXGSLPPGXXXLAXXGRGXRXHSXQGGXXGSPXNSGATPGN 549
PPG G P G P G A G H Q G G+P N G TPG+
Sbjct: 217 PPGAPGQP-GSGNAPGPAGPPGPAGPN-GQPGHPGQDGQPGAPGNDG-TPGS 265
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
protein K04H4.1b protein.
Length = 1502
Score = 29.1 bits (62), Expect = 5.3
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +1
Query: 394 PPGKXGXPXGXXXGSL--PPGXXXLAXXGR-GXRXHSXQGGXXGSPXNSG 534
PPG+ G L PPG + GR G + S + G G P NSG
Sbjct: 140 PPGQSGQNGNPGRPGLSGPPGEGGVNSQGRKGVKGESGRSGVPGLPGNSG 189
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
protein K04H4.1a protein.
Length = 1759
Score = 29.1 bits (62), Expect = 5.3
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +1
Query: 394 PPGKXGXPXGXXXGSL--PPGXXXLAXXGR-GXRXHSXQGGXXGSPXNSG 534
PPG+ G L PPG + GR G + S + G G P NSG
Sbjct: 140 PPGQSGQNGNPGRPGLSGPPGEGGVNSQGRKGVKGESGRSGVPGLPGNSG 189
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
collagen protein.
Length = 1758
Score = 29.1 bits (62), Expect = 5.3
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +1
Query: 394 PPGKXGXPXGXXXGSL--PPGXXXLAXXGR-GXRXHSXQGGXXGSPXNSG 534
PPG+ G L PPG + GR G + S + G G P NSG
Sbjct: 140 PPGQSGQNGNPGRPGLSGPPGEGGVNSQGRKGVKGESGRSGVPGLPGNSG 189
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 28.3 bits (60), Expect = 9.2
Identities = 21/69 (30%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Frame = -3
Query: 571 WXFGGXXCSRG*PXSWXGNXXPPLXGSXSAXXGXNXRGXGVRGGGXR--XXAXXASRLXP 398
W GG RG S G G+ G G GGG R R
Sbjct: 48 WGGGGPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGG 107
Query: 397 GGGRXXXGG 371
GGGR GG
Sbjct: 108 GGGRGGGGG 116
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.3 bits (60), Expect = 9.2
Identities = 23/91 (25%), Positives = 28/91 (30%), Gaps = 3/91 (3%)
Frame = +3
Query: 372 PPXXXRPPPGXXRLAXXALXRXPPPRTPXPRXXXPXXA---EXLPXRGGXXFPXQLXGYP 542
PP +P P + A PPP P P+ P A P L YP
Sbjct: 29 PPPPPKPAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPPLASYP 88
Query: 543 REQXXPPKXQXXAXTLHXPXSRXVXPXPPPA 635
+ P H + P PPPA
Sbjct: 89 QNAVPVPAPPPAPYPQHAVPA----PAPPPA 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,398,920
Number of Sequences: 27780
Number of extensions: 126235
Number of successful extensions: 331
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2667870690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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