Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_N24
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    84   2e-17
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.5  

>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
 Frame = +2

Query: 236 KIILRRLPPTMTEETFLEQVSP-IPEHDYFYFAKPDPTLG--NNLFSRAYINFVNVEDIF 406
           K+++  LPPT+ E+ FL+ ++  +P  ++  F+K   T+G  + L S AY+ F +   + 
Sbjct: 13  KVLVFNLPPTLPEQVFLQSINSFLPHVEWHRFSKGKATVGTRSELLSFAYLKFQSATAVQ 72

Query: 407 LFRDKFDGYVFLDEKGGEYVGIVEYAPFQRISXXXXXXDPKCGTLESDPIYQEFIESLNK 586
            F   + G+ F+D+K   Y  IV  AP+Q+I       D   G+LE DP +QEF      
Sbjct: 73  EFFRVYQGHTFIDKKNNTYRAIVTIAPYQKIPPSKVKADSLEGSLEQDPKFQEFKVQRES 132

Query: 587 DPEVESQPKLEYSYPINDVSEKKTQSTPLLEYLA 688
             +  S          +DV EK   STPLL+YLA
Sbjct: 133 YSQTASN---------DDVIEKLQTSTPLLQYLA 157


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 323 YFAKPDPTLGNNLFSRAYINFVNVEDIFLFRDKFDGYVFLDEK 451
           ++ + DP  G N+F++  +NF     +F+     D   FLDEK
Sbjct: 859 HWQRVDPLPGPNVFTKFCLNFDITAKVFIDNGLLD---FLDEK 898


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,291,903
Number of Sequences: 5004
Number of extensions: 67072
Number of successful extensions: 164
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)