Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_N23
(917 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.92
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.92
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.92
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.9
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 4.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 8.6
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.92
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +3
Query: 786 PPXPPPPKXXXGLSKGTPPXPXKKXXXPXPETSP 887
PP PPPP+ S PP P P ++P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Score = 27.9 bits (59), Expect = 2.1
Identities = 22/94 (23%), Positives = 29/94 (30%), Gaps = 5/94 (5%)
Frame = +3
Query: 630 KKXPPPXGGGXXXKXKGVPPXXX-----TXPPPPQXXKXXXXXXXXXXXXXXXXXXXPPX 794
KK PPP + +G PP + PPPP + P
Sbjct: 308 KKRPPPPPP-PSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSA----PP 362
Query: 795 PPPPKXXXGLSKGTPPXPXKKXXXPXPETSPGXP 896
PPPP+ + PP + P P P
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.92
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Frame = +3
Query: 786 PPXPPPPKXXX--GLSKGTPPXPXKKXXXPXPETSPGXP 896
PP PPP + S G PP P P P S G P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Frame = +3
Query: 786 PPXPPPPKXXXGLSK---GTPPXPXKKXXXPXPETSPGXP 896
PP P P + K G PP P P P+ S G P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVP 1208
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 0.92
Identities = 14/48 (29%), Positives = 14/48 (29%)
Frame = +3
Query: 705 PPPPQXXKXXXXXXXXXXXXXXXXXXXPPXPPPPKXXXGLSKGTPPXP 848
PPPP PP PPPP G PP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/54 (31%), Positives = 18/54 (33%)
Frame = +2
Query: 689 LXXNXXPPPPXXKKXTXXXXXXXXXXXXXXXXXPXPPPPXXXPGPX*RXPPPTP 850
L + PPPP T P PPPP PG PPP P
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP--PPGVAGAGPPPPP 779
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3
Query: 786 PPXPPPPKXXXGLSKGTPPXPXKKXXXPXPETS 884
PP PPPP G S+ P P + ETS
Sbjct: 777 PPPPPPPAVSAGGSRYYAPAPQAEPEPKIDETS 809
Score = 26.2 bits (55), Expect = 6.5
Identities = 14/48 (29%), Positives = 14/48 (29%)
Frame = +1
Query: 706 PPPPXXKKXXXXXXXXXXXXXXXPXXXPPXPPPXKXPXAXLKXPPPXP 849
PPPP P P PPP A PPP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 788 PXPPPPXXXPGPX*RXPPPTP 850
P PPPP G PPP P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/56 (25%), Positives = 15/56 (26%)
Frame = +3
Query: 639 PPPXGGGXXXKXKGVPPXXXTXPPPPQXXKXXXXXXXXXXXXXXXXXXXPPXPPPP 806
PPP PP + PPP Q P PPPP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -1
Query: 875 GXGGGXFFXGXGGGXFRXAXGXFXGGGXGG 786
G GGG G GGG + G F GG GG
Sbjct: 161 GFGGGSR-GGFGGGSRGGSRGGFRGGSRGG 189
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 786 PPXPPPPKXXXGLSKGTPPXP 848
PP PPPP S+ PP P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Frame = +2
Query: 794 PPPPXXXPG--PX*RXPPPTP 850
PPPP PG P + PPP P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 788 PXPPPPXXXPGPX*RXPPPTP 850
P PPPP P PPP P
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.144 0.465
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,597,955
Number of Sequences: 5004
Number of extensions: 22353
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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