Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_N21
(895 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 157 2e-39
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po... 51 2e-07
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 44 2e-05
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 29 0.89
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 28 2.1
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 28 2.1
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 28 2.1
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 28 2.1
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 27 2.7
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 4.8
SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|... 27 4.8
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 26 8.3
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 26 8.3
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 157 bits (381), Expect = 2e-39
Identities = 78/176 (44%), Positives = 107/176 (60%)
Frame = +2
Query: 263 MGITGLIPFIEKASRRTDVSEFSGCTVAIDSYCWLHKGAFACADKLVRGEETDMHIKYCL 442
MGI GL+ ++ + + V EFSG T+ +D Y WLHK F CA +L +ETD ++KY +
Sbjct: 1 MGIKGLLGLLKPMQKSSHVEEFSGKTLGVDGYVWLHKAVFTCAHELAFNKETDKYLKYAI 60
Query: 443 KYVTMLLSKNIKPILVFDGRHLPAKAMTESKRRESRNISKKRAAELLSLGKIEEARSYLR 622
ML +KP++VFDG LP KA TE KR+E R + + +L GK +A
Sbjct: 61 HQALMLQYYGVKPLIVFDGGPLPCKASTEQKRKERRQEAFELGKKLWDEGKKSQAIMQFS 120
Query: 623 RSVDITHAMALDLIKECRKMNVDCIVAPYEADAQLAYLNIKNIAQLVITEDSDLIL 790
R VD+T MA LI R+ ++ IVAPYEADAQL YL +NI +ITEDSD+++
Sbjct: 121 RCVDVTPEMAWKLIIALREHGIESIVAPYEADAQLVYLEKENIIDGIITEDSDMLV 176
>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 380
Score = 51.2 bits (117), Expect = 2e-07
Identities = 45/184 (24%), Positives = 78/184 (42%), Gaps = 9/184 (4%)
Frame = +2
Query: 263 MGITGLIPFIEKAS----RRTDVSEFSGCTVAIDS----YCWLHKGAFACADKLVRGE-E 415
MGI GL + + + + D+ + G VAID+ Y +L + +L+ + E
Sbjct: 1 MGIKGLAQVLSEHAPASVKHNDIKNYFGRKVAIDASMSLYQFLIQVRSQDGQQLMNEQGE 60
Query: 416 TDMHIKYCLKYVTMLLSKNIKPILVFDGRHLPAKAMTESKRRESRNISKKRAAELLSLGK 595
T H+ ++ IKP VFDG+ K+ +KR +++ E +G
Sbjct: 61 TTSHLMGMFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAKRVARHQKAREDQEETKEVGT 120
Query: 596 IEEARSYLRRSVDITHAMALDLIKECRKMNVDCIVAPYEADAQLAYLNIKNIAQLVITED 775
E + +R+V +T + + M + + AP EA+AQ A L +ED
Sbjct: 121 AEMVDRFAKRTVKVTRQHNDEAKRLLELMGIPFVNAPCEAEAQCAALARSGKVYAAASED 180
Query: 776 SDLI 787
D +
Sbjct: 181 MDTL 184
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 44.4 bits (100), Expect = 2e-05
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Frame = +2
Query: 263 MGITGLIPFIEKASRRTDVSEFSGCTVAIDSYCWLHKGAFACADKLVRGEET-DMHIKYC 439
MG++GL +E R + +AID+ W+++ A DK G + H+
Sbjct: 1 MGVSGLWDILEPVKRPVKLETLVNKRLAIDASIWIYQFLKAVRDK--EGNQLKSSHVVGF 58
Query: 440 LKYVTMLLSKNIKPILVFDGRHLPAKAMTESKRRESR 550
+ + LL IKP+ VFDG K T KR+ R
Sbjct: 59 FRRICKLLFFGIKPVFVFDGGAPSLKRQTIQKRQARR 95
Score = 36.3 bits (80), Expect = 0.006
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = +2
Query: 602 EARSYLRRSVDITHAMALDLIKECRKMNVDCIVAPYEADAQLAYLNIKNIAQLVITEDSD 781
+ RS R + ++T M + + R + IVAP EA+AQ + L + ++T+DSD
Sbjct: 741 QKRSEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELKLVDGIVTDDSD 800
Query: 782 LILLDVLRSSSN 817
+ L R N
Sbjct: 801 VFLFGGTRVYRN 812
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 29.1 bits (62), Expect = 0.89
Identities = 14/68 (20%), Positives = 36/68 (52%)
Frame = +2
Query: 482 ILVFDGRHLPAKAMTESKRRESRNISKKRAAELLSLGKIEEARSYLRRSVDITHAMALDL 661
I+ F+ + ++ + ++S K++++ ++ +EE SYL++ +D +A DL
Sbjct: 519 IIEFEDQLARLSSVRNNSIKQSTTFQVKKSSQKSTIQNLEEKVSYLQQFMDKNNATLTDL 578
Query: 662 IKECRKMN 685
+C ++
Sbjct: 579 EFQCSDLS 586
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 27.9 bits (59), Expect = 2.1
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Frame = +2
Query: 443 KYVTMLLSKNIKPILVFD--GRHLPAKAMTESK-------RRESRNISKKRAAELLS--- 586
K V M++ KN P++VF R A A+ SK R+ A LS
Sbjct: 444 KIVKMIMVKNYNPVIVFSFSKRECEALALQMSKLDMNDQTERDLVTTIFNNAVNQLSEKD 503
Query: 587 --LGKIEEARSYLRRSVDITHAMALDLIKE 670
L +IE LRR + I H+ L ++KE
Sbjct: 504 RELPQIEHILPLLRRGIGIHHSGLLPILKE 533
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = +2
Query: 635 ITHAMALDLIKECRKMNVDCIVAPYEADAQLAYLN-IKNIAQ---LVITEDSDLILLDVL 802
I H+ L +++ + + C + +A AQ+A L + ++ Q V+ + + +++
Sbjct: 260 IRHSFLLTAVRQTYNIFLLCKDSTTQAIAQVALLQMVDSVFQRLSTVLNHEREFSTINMN 319
Query: 803 RSSSNGSPWYRNS 841
+SSSNG+P NS
Sbjct: 320 KSSSNGTPDRANS 332
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +2
Query: 575 ELLSLGKIEEARSYLRRSVDITHAMALDLIKECRKMNVDCIVAPYEADAQLAYLNIKNIA 754
EL K++E L ++DI++ + LD + C +DC V + Q++YL KN+
Sbjct: 1051 ELFFQAKVDELHDTL--NLDISNEV-LDQLLRCL---LDCCVKYASTNMQISYLAAKNLG 1104
Query: 755 QL 760
+L
Sbjct: 1105 EL 1106
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 27.9 bits (59), Expect = 2.1
Identities = 53/209 (25%), Positives = 85/209 (40%), Gaps = 30/209 (14%)
Frame = +2
Query: 263 MGITGLIPFI--EKASRRTDVSEFSGCTVAIDSYCWL----HKGAFACADKLVRGEETDM 424
M I L FI +K ++ +S F C + ID+ +L H L E++
Sbjct: 1 MTIRSLNLFIIDKKHQHKSSLSSFQNCKLGIDASFYLTQIIHSFTPQELQSLAVNGESEY 60
Query: 425 HIKYCLKYVTMLLSKNIKPILVFDGRHL----------PAKAMTESKRRE---------- 544
+++ L ++NI PI VF+G L P K + S +
Sbjct: 61 LQHRISEFLEQLRTENITPIFVFNGIPLTFEASSQLEVPGKQKSHSALTDFEAFDPYDAN 120
Query: 545 -SRNISKKRAAELLSLGKIEEARSYLRRSVDITHAMALDLIK-ECRKMNVDCIVAPYEAD 718
RN+ + A+ + G+ + Y + + D +K + NV+ VAPY A
Sbjct: 121 IQRNMYRMDASGPANYGESKPTLLYTNQRDHLDRLC--DQVKFYLDQCNVEYFVAPYLAM 178
Query: 719 AQLAY-LNIKNIAQL-VITEDSDLILLDV 799
AQLAY LN + + I +DL+L V
Sbjct: 179 AQLAYFLNGTSSPYIDAIYGSTDLLLFGV 207
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 612 ERASSIFPKLKSSAALFFEIFRDSRLFDS 526
E ++FPKLK +++ + + + SRLF S
Sbjct: 1337 EEPLNLFPKLKDTSSPLWNLVKTSRLFQS 1365
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -2
Query: 330 LNSLTSVRREAFSINGIKPVIPILTNINTRSLVSLSTELGRGTL 199
LN+ T+ +N V+P T++NT ++V +T + T+
Sbjct: 102 LNTTTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTV 145
>SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 26.6 bits (56), Expect = 4.8
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 563 KRAAELLSLGKIEEARSYLRRSVDITHAMALDLIKECRKMNV-DCIVAPYEADAQLAY 733
++ + +SL +EEAR YLR+S D ++KE + +N+ V PYE Q Y
Sbjct: 47 EKLVDPVSLETLEEARKYLRKS-DYD-----QVVKERKLVNLCGYPVCPYEPKQQTRY 98
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.8 bits (54), Expect = 8.3
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = -1
Query: 382 KSSFMKPAIRINSNCTTAEFTNISPAGSLFNKWYQTSDTHINKY*HAFAS*FVYRTRPGN 203
+SS A R N+ T ++ + +SP LF+ + T+D + A Y+ G+
Sbjct: 337 ESSMSNDAQRENNPETISQIS-LSPTADLFSSFKITTDLEMTHLESAKKKYLAYKPLIGS 395
Query: 202 PLITRVLL 179
PL +V L
Sbjct: 396 PLKKKVSL 403
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 710 EADAQLAYLNIKNIAQLVITEDSDLILL 793
EA+A + ++ N+A V T+D+D++LL
Sbjct: 300 EAEAFASAISQNNLAYAVATQDTDVLLL 327
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,500,795
Number of Sequences: 5004
Number of extensions: 68850
Number of successful extensions: 191
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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