Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_N21
(895 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93382-2|CAB07612.2| 639|Caenorhabditis elegans Hypothetical pr... 156 2e-38
AY303575-1|AAP57297.1| 382|Caenorhabditis elegans cell death-re... 68 8e-12
AC024791-9|AAF60653.1| 382|Caenorhabditis elegans Cell-death-re... 68 8e-12
AF039713-6|AAB96723.1| 829|Caenorhabditis elegans Hypothetical ... 45 8e-05
U55370-1|AAA97993.3| 313|Caenorhabditis elegans Serpentine rece... 30 2.6
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr... 29 5.9
U13876-16|AAW88394.1| 420|Caenorhabditis elegans Proteasome reg... 29 5.9
U13876-15|AAA21173.2| 438|Caenorhabditis elegans Proteasome reg... 29 5.9
U39852-6|AAK39259.1| 418|Caenorhabditis elegans Hypothetical pr... 28 7.8
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 28 7.8
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 28 7.8
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 28 7.8
>Z93382-2|CAB07612.2| 639|Caenorhabditis elegans Hypothetical
protein F45G2.3 protein.
Length = 639
Score = 156 bits (379), Expect = 2e-38
Identities = 84/177 (47%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Frame = +2
Query: 263 MGITGLIPFIEKASRRTDVSEFSGCTVAIDSYCWLHKGAFACADKLVRGEETDMHIKYCL 442
MGI+GL+PF++ A R+ ++ E G +VAID C LH+G C DK+ GEET ++ Y
Sbjct: 1 MGISGLLPFVKNACRKGNILELRGKSVAIDVSCLLHRGLTGCMDKIHMGEETQSYVNYVN 60
Query: 443 KYVTMLLSKNIKPILVFDGRHLPAKAMTESKRRESRNISKKRAAELLSLGKIEEARSYLR 622
KYV LL ++VFDGR LPAK T +RRE R K+ A LL+ G EAR R
Sbjct: 61 KYVKELLGMGCHVVMVFDGRPLPAKKGTNEERRELREKRKEHAEMLLAKGLEREARDTYR 120
Query: 623 RSVDITHAMALDLIKECRKM-NVDCIVAPYEADAQLAYLNIKNIAQLVITEDSDLIL 790
+ I+ + + I+ R M NVD +VAPYEADAQLAYL + + VITEDSDLI+
Sbjct: 121 LATSISADIVENTIQYFRSMTNVDIVVAPYEADAQLAYLVQEKLVDAVITEDSDLIV 177
>AY303575-1|AAP57297.1| 382|Caenorhabditis elegans cell
death-related nuclease 1 protein.
Length = 382
Score = 68.1 bits (159), Expect = 8e-12
Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 8/183 (4%)
Frame = +2
Query: 263 MGITGLIPFIE----KASRRTDVSEFSGCTVAIDSYCWLHKGAFACAD--KLVRGE--ET 418
MGI GL I A + ++ F G TVAID+ L++ A ++ E ET
Sbjct: 1 MGIKGLSQVIADNAPSAIKVNEMKAFFGRTVAIDASMCLYQFLIAVRQDGSQLQSEDGET 60
Query: 419 DMHIKYCLKYVTMLLSKNIKPILVFDGRHLPAKAMTESKRRESRNISKKRAAELLSLGKI 598
H+ L + +KP+ VFDG+ K KR E R ++K E G +
Sbjct: 61 TSHLMGMLNRTVRMFENGVKPVYVFDGKPPDMKGGELEKRSERRAEAEKALTEAKEKGDV 120
Query: 599 EEARSYLRRSVDITHAMALDLIKECRKMNVDCIVAPYEADAQLAYLNIKNIAQLVITEDS 778
+EA + RR V +T + + M + + AP EA+AQ A+L +TED
Sbjct: 121 KEAEKFERRLVKVTKQQNDEAKRLLGLMGIPVVEAPCEAEAQCAHLVKAGKVFGTVTEDM 180
Query: 779 DLI 787
D +
Sbjct: 181 DAL 183
>AC024791-9|AAF60653.1| 382|Caenorhabditis elegans
Cell-death-related nuclease protein1 protein.
Length = 382
Score = 68.1 bits (159), Expect = 8e-12
Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 8/183 (4%)
Frame = +2
Query: 263 MGITGLIPFIE----KASRRTDVSEFSGCTVAIDSYCWLHKGAFACAD--KLVRGE--ET 418
MGI GL I A + ++ F G TVAID+ L++ A ++ E ET
Sbjct: 1 MGIKGLSQVIADNAPSAIKVNEMKAFFGRTVAIDASMCLYQFLIAVRQDGSQLQSEDGET 60
Query: 419 DMHIKYCLKYVTMLLSKNIKPILVFDGRHLPAKAMTESKRRESRNISKKRAAELLSLGKI 598
H+ L + +KP+ VFDG+ K KR E R ++K E G +
Sbjct: 61 TSHLMGMLNRTVRMFENGVKPVYVFDGKPPDMKGGELEKRSERRAEAEKALTEAKEKGDV 120
Query: 599 EEARSYLRRSVDITHAMALDLIKECRKMNVDCIVAPYEADAQLAYLNIKNIAQLVITEDS 778
+EA + RR V +T + + M + + AP EA+AQ A+L +TED
Sbjct: 121 KEAEKFERRLVKVTKQQNDEAKRLLGLMGIPVVEAPCEAEAQCAHLVKAGKVFGTVTEDM 180
Query: 779 DLI 787
D +
Sbjct: 181 DAL 183
>AF039713-6|AAB96723.1| 829|Caenorhabditis elegans Hypothetical
protein F57B10.6 protein.
Length = 829
Score = 44.8 bits (101), Expect = 8e-05
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Frame = +2
Query: 263 MGITGLIPFIEKASRRTDVSEFSGCTVAIDSYCWLHKGAFACADKLVRGEETDMHIKYCL 442
MGITGL +E + + G +AID W+++ A ++ H++ +
Sbjct: 1 MGITGLWKIVEPTATEIPLECLEGKKLAIDVSIWIYQAQLA-----YPSDQPFPHLRLLV 55
Query: 443 KYVTMLLSKNIKPILVFDGRHLP--AKAMTESKRRESRN 553
++ LL I+P+ VFDG +P + + E++R++ +N
Sbjct: 56 NRLSKLLFYKIRPVFVFDGPQVPPLKRQVLEARRQKRQN 94
>U55370-1|AAA97993.3| 313|Caenorhabditis elegans Serpentine
receptor, class x protein77 protein.
Length = 313
Score = 29.9 bits (64), Expect = 2.6
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = -2
Query: 627 LRRRYERASSIFPKLKSSAALFFE-IFRDSRLFDSVIALAGRCRPSNTKIGFMFLDRSIV 451
L+R+ + ++ F +K + ALFF+ IF+DS F SV + T M +D
Sbjct: 206 LKRKTNQNAANFKDIKKNMALFFQIIFQDSLFFISV---------AFTMKMNMLIDHRFY 256
Query: 450 TYFKQYFICMSV 415
++F Q F+ S+
Sbjct: 257 SFFSQTFLWQSI 268
>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -1
Query: 388 TCKSSFMKPAIRINSNCTTAEFTNISPAGSLFNKWYQT 275
T K ++M P IR SN T + +I+ GS FN Y+T
Sbjct: 1149 TPKVNYM-PVIRSFSNRVTIVYKSINSEGSFFNLTYET 1185
>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -1
Query: 388 TCKSSFMKPAIRINSNCTTAEFTNISPAGSLFNKWYQT 275
T K ++M P IR SN T + +I+ GS FN Y+T
Sbjct: 1149 TPKVNYM-PVIRSFSNRVTIVYKSINSEGSFFNLTYET 1185
>U13876-16|AAW88394.1| 420|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 6, isoform b
protein.
Length = 420
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 647 MALDLIKECRKMNVDCIVAPYEADAQLAYLNIKNIAQ 757
+A DLI+E +K++ ++ E + AY N+ NI +
Sbjct: 146 LAADLIRELKKVDDKDVLVEVELEESKAYYNLSNIGR 182
>U13876-15|AAA21173.2| 438|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 6, isoform a
protein.
Length = 438
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 647 MALDLIKECRKMNVDCIVAPYEADAQLAYLNIKNIAQ 757
+A DLI+E +K++ ++ E + AY N+ NI +
Sbjct: 164 LAADLIRELKKVDDKDVLVEVELEESKAYYNLSNIGR 200
>U39852-6|AAK39259.1| 418|Caenorhabditis elegans Hypothetical
protein K10C2.4 protein.
Length = 418
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 843 PEFLYHGDPFEEDLSTSNSMRSESSVI 763
P +L+H DPF D++ + S+R E +
Sbjct: 286 PAYLHHDDPFTLDINLAVSIRPEGDAV 312
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +2
Query: 500 RHLPAKAMTESKRRESRNISK-KRAAELLSLGKIEEARSYLRRSVD 634
R+L K T ++RRESRNI K K++ E L K EE S +++ D
Sbjct: 1266 RNLMNKRST-AQRRESRNIEKMKKSQENLDKEKSEEKISESKKNQD 1310
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +2
Query: 500 RHLPAKAMTESKRRESRNISK-KRAAELLSLGKIEEARSYLRRSVD 634
R+L K T ++RRESRNI K K++ E L K EE S +++ D
Sbjct: 1266 RNLMNKRST-AQRRESRNIEKMKKSQENLDKEKSEEKISESKKNQD 1310
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +2
Query: 500 RHLPAKAMTESKRRESRNISK-KRAAELLSLGKIEEARSYLRRSVD 634
R+L K T ++RRESRNI K K++ E L K EE S +++ D
Sbjct: 1266 RNLMNKRST-AQRRESRNIEKMKKSQENLDKEKSEEKISESKKNQD 1310
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,193,824
Number of Sequences: 27780
Number of extensions: 382376
Number of successful extensions: 934
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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