Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_N19
(916 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 33 0.32
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.42
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 32 0.55
07_03_1136 + 24218601-24218734,24218769-24219906 31 1.7
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 9.0
01_07_0239 + 42222024-42222133,42222220-42222301,42222396-422224... 28 9.0
01_03_0005 + 11568545-11569119,11569179-11569191 28 9.0
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 33.1 bits (72), Expect = 0.32
Identities = 17/42 (40%), Positives = 17/42 (40%)
Frame = +3
Query: 444 PPXPXGXGXGXWGPXPFPXXKTXXPXPXGXGKXXXPPPPQGG 569
PP P G G G P P P P G PPPP GG
Sbjct: 1184 PPPPPPRGHGGVGGPPTPPGAPAPPMPPGV--PGGPPPPPGG 1223
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +3
Query: 444 PPXPXGXGXGXWGPXPFPXXKTXXPXPXGXGKXXXPPPPQGG 569
PP P G G P P + P P G PPPP G
Sbjct: 1150 PPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRG 1191
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Frame = -1
Query: 571 PPPWGG-GGXXXXPXPXGXGXXVFXXGXGXGPQXPXPXPXGXGG 443
PPP GG GG P P G G P P P G GG
Sbjct: 1151 PPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGG 1194
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = -1
Query: 571 PPPWGGGGXXXXPXPXGXGXXVFXXGXGXGPQXPXPXPXGXG 446
PPP G GG P P G G P P P P G G
Sbjct: 1187 PPPRGHGGVGGPPTPPGAPAPPMPPGV---PGGPPPPPGGRG 1225
Score = 28.7 bits (61), Expect = 6.8
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = +3
Query: 399 PGPGXGGXXFXXXKNPPXPXGXGXGXWGPXPFPXXKTXXPXPXGXGKXXXPPPPQG 566
P P GG PP P G G P P P G G PP P G
Sbjct: 1150 PPPPVGG--LGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPG 1203
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 32.7 bits (71), Expect = 0.42
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 480 GPXPFPXXKTXXPXPXGXGKXXXPPPPQGG 569
GP P P K P P G PPPP GG
Sbjct: 343 GPPPPPPAKGPPPPPPPKGPSPPPPPPPGG 372
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = +3
Query: 438 KNPPXPXGXGXGXWGPXPFPXXKTXXPXPXGXGKXXXPPPPQGGG 572
K PP P G P P P P G K PPPP GG
Sbjct: 342 KGPPPPP-PAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGG 385
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +3
Query: 444 PPXPXGXGXGXWGPXPFPXXKTXXPXPXGXGKXXXPPPP--QGGGXK 578
PP P G P P P + P P GK PPPP +GG +
Sbjct: 345 PPPPPAKGPP---PPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASR 388
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 482 AXPXPPPKNXXPXAXGXGXXGXXPPPPRG 568
A P PPPK P G PPPP+G
Sbjct: 335 APPPPPPKGPPPPPPAKGP--PPPPPPKG 361
Score = 28.7 bits (61), Expect = 6.8
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 488 PXPPPKNXXPXAXGXGXXGXXPPPPRGGXK 577
P PPP P PPPP GG K
Sbjct: 345 PPPPPAKGPPPPPPPKGPSPPPPPPPGGKK 374
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 32.3 bits (70), Expect = 0.55
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +2
Query: 443 PPXPXGXGXWXLGAXPXPPPKNXXPXAXGXGXXGXXPPPPRG 568
PP G+ P PPP P A G PPPP G
Sbjct: 334 PPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPG 375
Score = 32.3 bits (70), Expect = 0.55
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +3
Query: 447 PXPXGXGXGXWGPXPFPXXKTXXPXPXGXGKXXXPPPPQGG 569
P P G G P P P P P G G PPP G
Sbjct: 338 PSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAG 378
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 482 AXPXPPPKNXXPXAXGXGXXGXXPPPP 562
A P PPP P A G G PPPP
Sbjct: 329 AAPAPPPPAPSPSAAGAGSGPPPPPPP 355
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -1
Query: 571 PPPWGGGGXXXXPXPXGXGXXVFXXGXGXGPQXPXPXPXGXGG 443
P P GGGG G G G G G P P G GG
Sbjct: 98 PGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGG 140
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +2
Query: 443 PPXPXGXGXWXLGAXPXPPPKNXXPXAXGXGXXGXXPPPP 562
PP P G + P PPP P PPPP
Sbjct: 549 PPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPP 588
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/40 (30%), Positives = 15/40 (37%)
Frame = +2
Query: 443 PPXPXGXGXWXLGAXPXPPPKNXXPXAXGXGXXGXXPPPP 562
PP P + P PPP++ G PPPP
Sbjct: 653 PPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPP 692
>01_07_0239 +
42222024-42222133,42222220-42222301,42222396-42222486,
42222702-42222814,42222912-42222984,42223080-42223178,
42223201-42223406,42223693-42223832,42223912-42223969,
42224067-42224137,42224207-42224741
Length = 525
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = -1
Query: 571 PPPWGGGGXXXXPXPXGXGXXVFXXGXGXGPQXPXPXPXGXGG 443
PPP+ GGG P G G + G GP P G G
Sbjct: 464 PPPYPGGGMGGAGGPRGGGGSGYGVG---GPNYQQGGPYGASG 503
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 28.3 bits (60), Expect = 9.0
Identities = 19/57 (33%), Positives = 21/57 (36%)
Frame = -1
Query: 577 FXPPPWGGGGXXXXPXPXGXGXXVFXXGXGXGPQXPXPXPXGXGGFFXXXKXXPPXP 407
+ PPP GGGG G G G G P P P P +F PP P
Sbjct: 112 YYPPPTGGGGGGGGGWQQGGG------GGGAYPTPPPPNPFLP--YFPFYYYSPPPP 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.307 0.145 0.463
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,986,825
Number of Sequences: 37544
Number of extensions: 278478
Number of successful extensions: 571
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)
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