Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_N16
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...   277   1e-75
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    28   2.1  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    27   2.8  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    27   3.7  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   3.7  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    26   8.5  

>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score =  277 bits (680), Expect = 1e-75
 Identities = 133/218 (61%), Positives = 164/218 (75%), Gaps = 5/218 (2%)
 Frame = +2

Query: 167 DEDFVDPWTVTGK----SDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLRRGI 334
           +E  V PW V G      + GIDY++LI +FG++KI  E ++RFEK+ G+K H LLRRG 
Sbjct: 4   EEQIVTPWDVKGSIVDGEEKGIDYERLIVQFGTRKITPEQLERFEKLTGKKPHLLLRRGA 63

Query: 335 FFSHRDLNVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKWLQDVFNVPLIIQLT 514
           FFSHRD ++IL+ +E  K FYLYTGRGPSSDSMHLGHMIPFMF KWLQDVF VPL+IQLT
Sbjct: 64  FFSHRDFDMILDRYEQKKPFYLYTGRGPSSDSMHLGHMIPFMFCKWLQDVFQVPLVIQLT 123

Query: 515 DDEKVLWRD-IKVEDARKMAYNNAKDIIAIGFDPSNTFIFNDLDFIGQCPAFYQNMLRIQ 691
           DDEK L++  + +ED ++ A  NAKDIIA+GFDP  TFIF +  ++G   AFYQN++RI 
Sbjct: 124 DDEKFLFKQGVSLEDCQRFARENAKDIIAVGFDPKKTFIFMNSTYVG--GAFYQNVVRIA 181

Query: 692 KCVTYNQVKGIFGFGDSDVIGKITFPSIEAAPAFSPLF 805
           KC+T NQ K  FGF DSD IGKI F SI+AAP+FS  F
Sbjct: 182 KCITANQSKACFGFTDSDSIGKIHFASIQAAPSFSSSF 219



 Score = 49.2 bits (112), Expect = 8e-07
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
 Frame = +3

Query: 747 SLARLHSHRLKPLQPFHH-FSFIFEN-KIVHCLXPCAIDQDPYFRMTRDVA 893
           S+ ++H   ++    F   F  IF   K + CL PCAIDQDPYFR+TRDV+
Sbjct: 200 SIGKIHFASIQAAPSFSSSFPHIFNGAKDIPCLIPCAIDQDPYFRLTRDVS 250


>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 641 DFIGQCPAFYQNMLRIQKCVTYNQVKGIFGFGDSDVIGKITFPSIE 778
           DF+ +C   +QN+  I  C TYN  K   G  D ++I  +  PS++
Sbjct: 41  DFLAKCKTEFQNVKAI--CRTYNS-KFYMGIFDKEIIDNLP-PSVK 82


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 720 AYSVSVILMSLARLHSHRLKPLQPFHH--FSFIFENKIVHCLXPCAIDQDPYF 872
           A S+   L+++    S R    + FH   FS +F   IV  + PC    DP+F
Sbjct: 39  AISIVFSLIAIFWRWSRRRTIREQFHIALFSVLFIRSIVQMIHPCLALSDPFF 91


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 149 NIAIAEDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVI 298
           N+   ED+DF+D  T T   +   DY  + ++  +   D ++  +  K I
Sbjct: 349 NVDDEEDDDFLDVTTATSLQNKSTDYGSVKRKTENLNSDSDIQNKRTKSI 398


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 766 ECNLANDIRITETEYALYLVVCDTFLYP*HVLVKSWA 656
           +CN+   I    T      V+CD  + P  V++K WA
Sbjct: 164 DCNINKTISTLNTRLMRSYVLCDPRVRPLIVMIKYWA 200


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 647 IGQCPAFYQNMLRIQKCVTYNQVKGIFGFGDSDVIGKITFPS 772
           + + PA Y N  +    +TY+   GIF     D I +I FP+
Sbjct: 27  VSKIPAVYSNDNKFV-FLTYDTFIGIFSLITGDCINRIFFPN 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,799,396
Number of Sequences: 5004
Number of extensions: 83185
Number of successful extensions: 183
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)