Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_N15
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   236   4e-63
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   235   5e-63
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   6.4  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   8.5  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   8.5  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  236 bits (577), Expect = 4e-63
 Identities = 114/219 (52%), Positives = 142/219 (64%)
 Frame = +1

Query: 91  LSVARPLGVGVFREERDGAGXQPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 270
           ++ ARP  V ++ ++      +     FVFKAPIRPDLV  VH +++KN RQPY VS++A
Sbjct: 1   MAAARPT-VSIYNKD-GSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKA 58

Query: 271 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXX 450
           GHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH      
Sbjct: 59  GHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQN 118

Query: 451 XXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWS 630
                               ARGH IE+IPE+PLVV D VQ   KTK+AV  L+ +KA+ 
Sbjct: 119 EKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYR 178

Query: 631 DILKVYKSQRLRAGKGKMXXXXXXXXXGAPIIFTXDXGV 747
           D++KV  S++LRAGKGK+         G  ++F  D G+
Sbjct: 179 DVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGI 217


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  235 bits (576), Expect = 5e-63
 Identities = 116/220 (52%), Positives = 144/220 (65%), Gaps = 1/220 (0%)
 Frame = +1

Query: 91  LSVARPLGVGVFREERDGA-GXQPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 267
           ++ ARP  V ++   +DG+   +     FVFKAPIRPDLV  VH +++KN RQPY VS++
Sbjct: 1   MAAARPT-VSIY--SKDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEK 57

Query: 268 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 447
           AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH     
Sbjct: 58  AGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQ 117

Query: 448 XXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAW 627
                                ARGH IE+IPE+PLVV D VQ   KTK+AV  L+ +KA+
Sbjct: 118 NEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAY 177

Query: 628 SDILKVYKSQRLRAGKGKMXXXXXXXXXGAPIIFTXDXGV 747
            D++KV  S++LRAGKGK+         G  ++F  D G+
Sbjct: 178 RDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGI 217


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 207 DQVRTYGRLEHESGGAWLXPCTVSLFSEYTD 115
           D  +TY  +E E  G +    T   FSEY D
Sbjct: 905 DLAKTYFFIEDEGDGTYKFKLTYGAFSEYLD 935


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +3

Query: 723 NLHXXYXGXTXPPPXXPPGWXP 788
           NL   +     PPP  P GW P
Sbjct: 281 NLQSPFQNNWFPPPTIPEGWEP 302


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 168 PIRVQGAHTSGPGQ*CSRFYVQELEAALLREQ 263
           P+ VQG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,185,176
Number of Sequences: 5004
Number of extensions: 59144
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)