Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_N14
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.15 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   0.59 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.6 bits (51), Expect(2) = 0.15
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +2

Query: 602  KKPPPPPPP 628
            ++PPPPPPP
Sbjct: 1353 QQPPPPPPP 1361



 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 608  PPPPPPP 628
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 21.4 bits (43), Expect(2) = 1.1
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 602  KKPPPPPPP 628
            ++ PPPPPP
Sbjct: 1352 QQQPPPPPP 1360



 Score = 21.0 bits (42), Expect(2) = 1.1
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 686  PPPPPP 703
            PPPPPP
Sbjct: 1356 PPPPPP 1361



 Score = 21.0 bits (42), Expect(2) = 0.15
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 686  PPPPPP 703
            PPPPPP
Sbjct: 1357 PPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect(2) = 0.59
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 605 KPPPPPPP 628
           KP PPPPP
Sbjct: 340 KPAPPPPP 347



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 602 KKPPPPPPP 628
           K  PPPPPP
Sbjct: 340 KPAPPPPPP 348



 Score = 21.0 bits (42), Expect(2) = 0.59
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 686 PPPPPP 703
           PPPPPP
Sbjct: 343 PPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/33 (30%), Positives = 12/33 (36%)
 Frame = +2

Query: 605 KPPPPPPPXXXRXGGXPPPPXXXXFXXPPPPPP 703
           +P P   P   + G  P P        PP  PP
Sbjct: 24  QPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 533 GGXLPXPPXFFXPPPPXPXXXXXKKPPPPP 622
           GG LP  P    P PP P        PP P
Sbjct: 406 GGQLP--PSAGAPMPPIPNMSNMSGMPPLP 433


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +3

Query: 687  PPPPPPK 707
            PPPPPP+
Sbjct: 1859 PPPPPPR 1865



 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +2

Query: 605  KPPPPPP 625
            +PPPPPP
Sbjct: 1858 EPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,550
Number of Sequences: 438
Number of extensions: 9088
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)