Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_N05
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...   141   9e-35
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...   139   5e-34
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    27   3.2  
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    27   3.2  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    25   9.6  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score =  141 bits (342), Expect = 9e-35
 Identities = 83/154 (53%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
 Frame = +2

Query: 176 AGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 355
           A S++ + +SL +      IKLF ++    V+V D+SL DYI++     + LPH+AGR+ 
Sbjct: 2   AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQ 56

Query: 356 HKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGEN-LCSTRDCHY 532
            KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +N L    D   
Sbjct: 57  TKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVA 116

Query: 533 QLWXP*KSTXIGRAGTVRXQXVDXSPLXRVYQXI 634
                  ST IG AGTVR Q VD SPL RV Q +
Sbjct: 117 ACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQAL 150


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score =  139 bits (336), Expect = 5e-34
 Identities = 83/150 (55%), Positives = 98/150 (65%), Gaps = 4/150 (2%)
 Frame = +2

Query: 197 TMSLPQAADIPE---IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRF 367
           T SL     + E   IKLF ++    V+V D+SL DYI++     + LPH+AGR+  KRF
Sbjct: 3   TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRF 60

Query: 368 RKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGEN-LCSTRDCHYQLWX 544
           RKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +N L    D       
Sbjct: 61  RKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGP 120

Query: 545 P*KSTXIGRAGTVRXQXVDXSPLXRVYQXI 634
              ST IG AGTVR Q VD SPL RV Q +
Sbjct: 121 REDSTRIGSAGTVRRQAVDVSPLRRVNQAL 150


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +2

Query: 212 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 355
           + ADI  +  FGR    ++++++  +   I+V+EKYAK  P    R A
Sbjct: 7   KVADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +2

Query: 389 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGEN 505
           V+ L N +M     +GKK  A +IV  A  II   TGEN
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGEN 160


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -1

Query: 374 LYGNACVHTCQLNEVNILRTSL*RKCSPAETYQRLAHRSNSICRKA*FQECRRL 213
           L  N C+    LNE ++ + SL R   P++    ++ R +S+ +K+   E R L
Sbjct: 147 LLNNCCIGIANLNEDSVHKISLTRSGKPSQLV-TVSCRHSSVIQKSYGSEKRYL 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,872
Number of Sequences: 5004
Number of extensions: 53226
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)