Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_N03
(895 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.024
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.072
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.29
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.51
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 29 0.67
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.89
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.6
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.3 bits (75), Expect = 0.024
Identities = 27/112 (24%), Positives = 34/112 (30%), Gaps = 3/112 (2%)
Frame = +3
Query: 462 PPPXGGXXXXXXXXPEXRSPQNXGXTLXRPXEXGXPPXAGXXXKAPXXAXXXXXPPPXKX 641
PP G P +P + + + PP + A A PPP
Sbjct: 258 PPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPP 317
Query: 642 PXR---PPPPXRXXXPPXL*XXPPPPQEKTKCXPXXRXPPPTGXXSPPXPXP 788
R PP L PPPP+ PP G +PP P P
Sbjct: 318 SRRNRGKPPIGNGSSNSSLPPPPPPPRSNA---AGSIPLPPQGRSAPPPPPP 366
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/58 (31%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Frame = +3
Query: 627 PPXKXPXRPPPPXRXXXPPXL*XXPPPPQEKTKCXPXXRXPPP----TGXXSPPXPXP 788
PP P R PP PPPP ++ R PPP +PP P P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS-APSTGRQPPPLSSSRAVSNPPAPPP 393
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Frame = +3
Query: 624 PPPXKXPXRPPPPXRXXXPPXL*XXPPPPQEKTKCXPXXRXPPPT--GXXSPPXP 782
P P + PPPP P PPP ++ PPP G +P P
Sbjct: 352 PLPPQGRSAPPPPPPRSAPST--GRQPPPLSSSRAVSNPPAPPPAIPGRSAPALP 404
Score = 25.8 bits (54), Expect = 8.3
Identities = 18/59 (30%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Frame = +3
Query: 627 PPXKXPXRPPP-----PXRXXXPPXL*XXPPPPQEKTKCXPXXRXPPPTGXXSPPXPXP 788
PP P PP P PP PP P P PP PP P P
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPL----PPAAPAPPPAPAP 482
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.072
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = +3
Query: 597 PXXAXXXXXPPPXKXPXRPPPPXRXXXPPXL*XXPPPPQEKTKCXPXXRXPPP 755
P A P P P PP P PP PPPP P PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPP-----PPPPPGVAGAGPPPPPPPP 782
Score = 30.7 bits (66), Expect = 0.29
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Frame = +3
Query: 651 PPPPXRXXXPPXL*XXPPPPQEKTKCXPXXRXPPP--TGXXSPPXPXP 788
PPPP P P PP P PPP G PP P P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 29.9 bits (64), Expect = 0.51
Identities = 16/51 (31%), Positives = 16/51 (31%)
Frame = +3
Query: 636 KXPXRPPPPXRXXXPPXL*XXPPPPQEKTKCXPXXRXPPPTGXXSPPXPXP 788
K P PPP P PPP P PP PP P P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 596 PLXGGXPKXPPPXKXPXKAPPP 661
P+ GG P PPP PPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPP 777
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +3
Query: 567 PPXAGXXXKAPXXAXXXXXPPPXKXPXRPPPPXRXXXPPXL*XXPPPP 710
PP P A PPP PPPP PPPP
Sbjct: 734 PPPPAVIVPTPAPAPI-PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = +3
Query: 624 PPPXKXPXRPPPPXRXXXPPXL*XXPPPPQEKTKCXPXXRXPPPTGXXSPPXP 782
PP P P P P + PPPP PPP PP P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP-----PPPP 783
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.29
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = +3
Query: 651 PPPPXRXXXPPXL*XXPPPPQEKTKCXPXXRXPPPTGXXS-PPXPXP 788
PP + PP + PPP + P P P G S PP P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 30.3 bits (65), Expect = 0.39
Identities = 18/55 (32%), Positives = 19/55 (34%)
Frame = +3
Query: 624 PPPXKXPXRPPPPXRXXXPPXL*XXPPPPQEKTKCXPXXRXPPPTGXXSPPXPXP 788
PP P PPPP PP PP P P PP +P P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPP---SAPPMPAGPPSAPP----PPLPASSAPSVPNP 1746
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = +3
Query: 567 PPXAGXXXKAPXXAXXXXXPPPXKXPXRPPPPXRXXXPPXL*XXPPPP 710
PP P + PPP P P P PP PPPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPP---SAPPPP 1734
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.51
Identities = 25/84 (29%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Frame = +3
Query: 549 PXEXGXPPXAGXXXKAPXXAXXXXXPPPXKXPXRPPP---PXRXXXP-PXL*XXPPPPQE 716
P G PP AP PP P PP P P P PP P+
Sbjct: 1086 PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145
Query: 717 KTKCXPXXRXPPPTGXXSPPXPXP 788
P P P+G +PP P P
Sbjct: 1146 SVAAPP---VPAPSG--APPVPKP 1164
Score = 28.7 bits (61), Expect = 1.2
Identities = 27/89 (30%), Positives = 28/89 (31%), Gaps = 9/89 (10%)
Frame = +3
Query: 549 PXEXGXPPXAGXXXKAPXXAXXXXXPPPXKXPXRPPP---PXRXXXP---PXL*XXP-PP 707
P G PP AP PP K PP P P P P PP
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193
Query: 708 PQEKTKC-XPXXRXPP-PTGXXSPPXPXP 788
P E P PP P +PP P P
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/76 (26%), Positives = 21/76 (27%), Gaps = 2/76 (2%)
Frame = +3
Query: 567 PPXAGXXXKAPXXAXXXXXPPPXKXPXRPPPPXRXXXPPXL*XXPPPPQEKTKCXPXXRX 746
PP AP PP PP P P P P + P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSG 1081
Query: 747 PPPTGXXS--PPXPXP 788
PP S PP P P
Sbjct: 1082 APPVPAPSGIPPVPKP 1097
Score = 26.2 bits (55), Expect = 6.3
Identities = 23/80 (28%), Positives = 24/80 (30%), Gaps = 6/80 (7%)
Frame = +3
Query: 567 PPXAGXXXKAPXXAXXXXXPPPXKXPXRPPPPXRXXXPPXL*XXPPPPQEKTK---CXPX 737
P A AP P P PPP P PP P T P
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPS 1223
Query: 738 XRXPP---PTGXXSPPXPXP 788
PP PT +PP P P
Sbjct: 1224 AGLPPVPVPTA-KAPPVPAP 1242
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 29.5 bits (63), Expect = 0.67
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +3
Query: 651 PPPPXRXXXPPXL*XXPPPPQEKTKCXPXXRXPPPTGXXSPPXP 782
PPPP + PP PP Q + P + P P P P
Sbjct: 207 PPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPPVQAYPQAP 250
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.1 bits (62), Expect = 0.89
Identities = 20/64 (31%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Frame = +2
Query: 422 GXGGGGFSXXXXXPPP-PGGXXGXXXXXAXXPFXXKPGXXXGKTXGAGGPPXXRXXXKGP 598
G G GGF PPP PGG G G G G G P G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246
Query: 599 LXGG 610
GG
Sbjct: 247 FGGG 250
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 627 PPXKXPXRPPPPXRXXXPPXL*XXPPPP 710
PP P PPPP PP PPPP
Sbjct: 5 PPGNPPPPPPPP--GFEPPSQPPPPPPP 30
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.6
Identities = 22/82 (26%), Positives = 24/82 (29%), Gaps = 2/82 (2%)
Frame = +3
Query: 549 PXEXGXPPXAGXXXKAPXXAXXXXXPPPXKXPXRPPPPXRXXXPPXL*XXPPP--PQEKT 722
P PP + P A PP PP P + PP PPP P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSK--APPIPSSLPPPAQPAAPV 181
Query: 723 KCXPXXRXPPPTGXXSPPXPXP 788
K P P PP P
Sbjct: 182 KSPPSAPSLPSAVPPMPPKVPP 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,375,564
Number of Sequences: 5004
Number of extensions: 17391
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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