Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_M24
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb...    36   0.006
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   2.7  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   3.6  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    27   3.6  

>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 202

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +3

Query: 462 QLGSEMMAAELKIYEALSKILESGIEVAKENIQKSKIDLAQAKTVRKNRIEYDVLAKVIS 641
           Q+  +M A E+ +YE   K  ++  E  K  I + + DL  A+   + R +YD LAK I 
Sbjct: 55  QMQLDMNAKEVDVYEGELKKTQTFCEAEKTEISQLEQDLLVAQEELRKREQYDELAKPIM 114

Query: 642 EQ--PDRKEXSERLSTLKTELXNL 707
            +    R E  E +  L+  +  L
Sbjct: 115 SKGLRSRTEQQESIGKLQDAIREL 138


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 660  EXSERLSTLKTELXNLXXPQQQLEVGXLTKNSPV 761
            E  E++ TLKT+L N    ++QLE    T+ + V
Sbjct: 1255 ELREKIETLKTDLANFRLNKEQLESQLQTEKAAV 1288


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 315 YRHRRSEVFYESHLRHPLCLE*NSNEIMISSEF 217
           + H      + SH  H +CL   +N+I I  EF
Sbjct: 475 HNHDHGSHHHHSHSNHSMCLPNTTNDINIFEEF 507


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 561 SVCSLWPPLFRFLEFSRVLRRFLIQQPSF 475
           S+  +W  +F   E S+V+RRF    PSF
Sbjct: 252 SISGVWSRMFSETEASQVMRRFKEIDPSF 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,629
Number of Sequences: 5004
Number of extensions: 54885
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)