Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_M23
(938 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0079 - 20732041-20732097,20732219-20732301,20732661-207328... 129 3e-30
01_06_1301 + 36122797-36122838,36122958-36123033,36123145-361232... 118 5e-27
01_01_0322 - 2589074-2589121,2589214-2589296,2589414-2589492,258... 105 7e-23
01_04_0054 - 15456668-15459691 33 0.43
09_01_0088 + 1268120-1268139,1268288-1268361,1268500-1268750,126... 30 3.1
04_04_0148 - 23114000-23114113,23114215-23114350,23114813-231149... 29 7.1
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 28 9.3
>09_06_0079 -
20732041-20732097,20732219-20732301,20732661-20732834,
20732927-20733059,20733226-20733310,20733527-20733650,
20733835-20733904,20734643-20734669,20734788-20734949
Length = 304
Score = 129 bits (312), Expect = 3e-30
Identities = 55/112 (49%), Positives = 76/112 (67%)
Frame = +1
Query: 124 KFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAQ 303
KF VGGNWK NG K+ ++++V L L+P+V+V+V P IY+ VK + D +EV+AQ
Sbjct: 54 KFFVGGNWKCNGTKDSVSKLVTELNAATLEPDVDVVVAPPFIYIDQVKNSLTDRIEVSAQ 113
Query: 304 NCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHA 459
N W GA+TGEIS + D+G WVILGHSERR + GE D+ + +K A+A
Sbjct: 114 NVWIGKGGAYTGEISAEQLVDIGCQWVILGHSERRHVIGEDDQFIGKKAAYA 165
Score = 46.0 bits (104), Expect = 4e-05
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +2
Query: 473 LKVIACIGETLEXRESGKTEEVVFRQLKAXYRPLVTN 583
+KVIACIGE LE RE+GKT +V F+Q+KA + +TN
Sbjct: 170 VKVIACIGELLEEREAGKTFDVCFKQMKA-FADSITN 205
Score = 33.5 bits (73), Expect = 0.25
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 588 NIVLAYEPVXAIGTGKMXFPTXSXVXXPLXTVXXWLPAN 704
++V+AYEPV AIGTGK+ P + V WL N
Sbjct: 208 DVVIAYEPVWAIGTGKVATPEQAQEVH--AAVRDWLKTN 244
>01_06_1301 +
36122797-36122838,36122958-36123033,36123145-36123268,
36123675-36123759,36124076-36124208,36124712-36124806,
36124982-36125060,36125205-36125287,36125505-36125555
Length = 255
Score = 118 bits (285), Expect = 5e-27
Identities = 57/115 (49%), Positives = 75/115 (65%), Gaps = 2/115 (1%)
Frame = +1
Query: 121 RKFVVGGNWKMNGDKNQINEIVNNLKKG--PLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 294
RKF VGGNWK NG + +IV L + P + VEV+V P ++L VK ++ + V
Sbjct: 4 RKFFVGGNWKCNGTGEDVKKIVTVLNEAEVPSEDVVEVVVSPPFVFLPQVKGLLRPDFSV 63
Query: 295 AAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHA 459
AAQNCW GAFTGEIS M+ ++ V WVILGHSERR + GE + VA+K+A+A
Sbjct: 64 AAQNCWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYA 118
Score = 46.0 bits (104), Expect = 4e-05
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = +2
Query: 470 GLKVIACIGETLEXRESGKTEEVVFRQLKA 559
G+KVIACIGETLE RE+G T EVV Q KA
Sbjct: 122 GIKVIACIGETLEQREAGTTMEVVAAQTKA 151
Score = 35.5 bits (78), Expect = 0.061
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +3
Query: 588 NIVLAYEPVXAIGTGKMXFP 647
N+VLAYEPV AIGTGK+ P
Sbjct: 161 NVVLAYEPVWAIGTGKVATP 180
>01_01_0322 -
2589074-2589121,2589214-2589296,2589414-2589492,
2589622-2589716,2590198-2590330,2590601-2590685,
2591040-2591163,2591297-2591372,2594305-2594319
Length = 245
Score = 105 bits (251), Expect = 7e-23
Identities = 48/106 (45%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Frame = +1
Query: 148 KMNGDKNQINEIVNNLKKGPLDPN--VEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSP 321
++NG +Q+++IV L +G + VEV+V P ++L VK+ + ++VAAQNCW
Sbjct: 4 ELNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKK 63
Query: 322 KGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHA 459
GAFTGE+S M+ ++ + WVILGHSERR++ GE +E V +KVA+A
Sbjct: 64 GGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYA 109
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = +2
Query: 470 GLKVIACIGETLEXRESGKTEEVVFRQLKA 559
GLKVIAC+GETLE RESG T +VV Q KA
Sbjct: 113 GLKVIACVGETLEQRESGSTMDVVAAQTKA 142
Score = 34.7 bits (76), Expect = 0.11
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +3
Query: 588 NIVLAYEPVXAIGTGKMXFPTXSXVXXPLXTVXXWLPAN 704
N+V+AYEPV AIGTGK+ P + + WL AN
Sbjct: 152 NVVVAYEPVWAIGTGKVATPDQAQEVH--DGLRKWLAAN 188
>01_04_0054 - 15456668-15459691
Length = 1007
Score = 32.7 bits (71), Expect = 0.43
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = -3
Query: 552 NCLKTTSSVLPDSLXSRVSPIQAMTFKPDS-RGMSNLFSNKFIFFTKNCSSFRMTKYN 382
+C + ++ VL L +RV +A+ FKPDS RG + +N+ I F+ SFR+TK N
Sbjct: 929 DCTEASTKVL---LLTRVDGYRAV-FKPDSVRGTLEIPTNENIRFSHLIPSFRLTKEN 982
>09_01_0088 +
1268120-1268139,1268288-1268361,1268500-1268750,
1268845-1269048,1269488-1269805,1269893-1269910
Length = 294
Score = 29.9 bits (64), Expect = 3.1
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +1
Query: 85 KVGSSNKITEMGRKFVVGG---NWKMNGDKNQINEIVNNLKKGPLDPNV 222
+V S I+E+ RKF + G NW ++ ++ + + LKKG PN+
Sbjct: 104 RVYYSKMISEVERKFAIDGRANNWILHQLDGKLRQYKSKLKKGYYKPNL 152
>04_04_0148 -
23114000-23114113,23114215-23114350,23114813-23114912,
23115003-23115113,23115197-23115234,23115359-23115429,
23116998-23117176,23117272-23117389
Length = 288
Score = 28.7 bits (61), Expect = 7.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 303 LGCNFDIIRNDSLHIRQVNSRNTNNYL 223
LG NF++ RND L I V +N L
Sbjct: 104 LGLNFEVYRNDELTIEDVKRKNPRGIL 130
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Frame = +1
Query: 106 ITEMGRKFVVGGNWKMNGDKN-----QINEIVNNLKKG 204
+ ++ ++F+ GGN +NGD + I E+V L+KG
Sbjct: 709 LNKLAKRFLHGGNGAVNGDSSLPSRAYIEEVVQELQKG 746
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,843,702
Number of Sequences: 37544
Number of extensions: 357647
Number of successful extensions: 604
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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