Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_M23
         (938 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...   188   8e-50
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   2.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   9.2  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    22   9.2  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score =  188 bits (457), Expect = 8e-50
 Identities = 84/115 (73%), Positives = 98/115 (85%)
 Frame = +1

Query: 115 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 294
           MGRKF VGGNWKMNG K++IN+IV  LKKGPLD NVEV+VGVP+IYL+Y K I+P+N+ +
Sbjct: 1   MGRKFFVGGNWKMNGTKSEINDIVGFLKKGPLDSNVEVVVGVPSIYLTYAKNILPNNISI 60

Query: 295 AAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHA 459
           A QN +K  KGAFTGEISPAM+ D G+ WVILGHSERR IFGE DEL+AEKVAHA
Sbjct: 61  AGQNTYKVAKGAFTGEISPAMLLDNGIPWVILGHSERRNIFGENDELIAEKVAHA 115



 Score = 57.6 bits (133), Expect = 2e-10
 Identities = 27/32 (84%), Positives = 29/32 (90%)
 Frame = +2

Query: 464 ESGLKVIACIGETLEXRESGKTEEVVFRQLKA 559
           ESGLKVIACIGE LE RE+GKT+EVVFRQ KA
Sbjct: 117 ESGLKVIACIGEKLEEREAGKTDEVVFRQTKA 148



 Score = 33.5 bits (73), Expect = 0.003
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +3

Query: 588 NIVLAYEPVXAIGTGKMXFP 647
           N+V+AYEPV AIGTGK   P
Sbjct: 158 NVVVAYEPVWAIGTGKTATP 177


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 127 FVVGGNWKMNGDKNQINEIVNNLKKGP-LDPNVEVIVGVPAIYLSYVKTIIP 279
           F+  G W + G   + NEI  N    P +D    VI+    +Y  +   I+P
Sbjct: 191 FITNGEWDLLGVPGKRNEIYYNCCPEPYIDITFVVIIRRRTLYY-FFNLIVP 241


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 6/26 (23%), Positives = 15/26 (57%)
 Frame = +1

Query: 229 IVGVPAIYLSYVKTIIPDNVEVAAQN 306
           ++G P+  + Y   +IP+   ++ +N
Sbjct: 848 VIGTPSTGMMYKPFLIPEQTSISHEN 873


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 525 LPDSLXSRVSPIQAMTFKPDSRGMSNLFSNKFIFFTKN 412
           LPD     V+ I+  TFK +++   +L   +   F+ N
Sbjct: 76  LPDRKFQTVTSIEGNTFKTETQVNDSLKVTRLYEFSDN 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,462
Number of Sequences: 438
Number of extensions: 4557
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)