Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_M21
         (939 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    27   2.9  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    27   3.8  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   5.0  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    26   6.7  
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    26   6.7  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    26   6.7  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   6.7  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   8.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   8.8  

>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/57 (22%), Positives = 27/57 (47%)
 Frame = +2

Query: 404 DDNDQGWRPDAYSSEHSMSQDQGKIQHQVDEEALSNEDVEPAPVYDFRAIEETAPRD 574
           +++D  +  D    E S   D+ +++ + +EE    ED  P PV   +    + P++
Sbjct: 58  EEDDTNYEEDIIDDEESAQVDEEELEEEEEEE----EDATPEPVVTSKKNSRSKPKN 110


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 473 KIQHQVDEEALSNEDVEPAPVYDFRAI 553
           K QH  +++A  N DVE  P+ + ++I
Sbjct: 153 KTQHDENDDASDNSDVEEDPILEHKSI 179


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 612  HQSAEEYCANRDMQRLRRCEVDLFLG 689
            H   E+Y  + D+  L+RC V + +G
Sbjct: 1704 HGGGEQYTTSYDLATLKRCAVTILMG 1729


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -2

Query: 659 KPLHVSVSTILFSTLM*RGFKRNWNTDTYHAVLFL 555
           +P+H++   + +S L  R   R++NTD  +  + L
Sbjct: 19  RPVHIAAPMVRYSKLPFRQLVRDYNTDIVYTPMIL 53


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 440 SSEHSMSQDQGKIQHQVDEE 499
           S EH+ S D G  QH +D+E
Sbjct: 46  SKEHNSSPDDGPWQHDLDQE 65


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -2

Query: 443 WNMHQVAILGHYHLELKEYHLEWFSLIIDNRPHQN-EHWF*GSDSYLRLSFFLHCHHSQQ 267
           W M       +  +E  +  LE+F LI ++ P QN   W+     YL L  + H     +
Sbjct: 431 WGMLYDIAKAYMDIERLDLALEYFVLICNHEPAQNIGLWYNMGVCYLELKEYEHAQQCME 490


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 401 QDDNDQGWRPDAYSSEHSMSQDQGKIQHQVDEEALSNED 517
           QD+    +    YSSE S S+D+ K +       +SN+D
Sbjct: 617 QDEPSYKFHKYEYSSEESGSEDEFKSEKDTKGYVISNDD 655


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 595 ETGIQTLITRCCFFNCSKIVY-GCWFNILIGKGLFINLVLNFSLVLTHGV 449
           E+ I TLIT CC      I++   +F+I +   L    ++NF L L H V
Sbjct: 794 ESCIDTLITNCCAMQSFSIMHLPKFFSITMSSNLSERSLVNF-LRLLHVV 842


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 224  STLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKT 331
            STL    +++  S S+G G S    + +  N++P T
Sbjct: 3649 STLDYSVSSSSLSSSIGVGSSFSSNSKVTSNKVPST 3684


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,423,977
Number of Sequences: 5004
Number of extensions: 67440
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)