Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_M21
         (939 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.0  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   9.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 431 QVAILGHYHLELKEYHLEWFSLIIDNRPHQNE 336
           Q  +  H+HL+   +HL+  ++   +RP+Q +
Sbjct: 135 QETLQRHHHLQNHHHHLQSTAVQDHHRPYQQQ 166



 Score = 21.8 bits (44), Expect = 9.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 686 EKEVDFASSKPLHVSVSTILFSTL 615
           EKEV+ A  KPL      + FSTL
Sbjct: 707 EKEVEKALLKPLLSLEDLVRFSTL 730


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -2

Query: 605  GFKRNWNTDTYHAVLFLQLL*NRIRVLVQHPHWKGPLHQLGVEFFLGLDSWS 450
            GF  N       ++  L+L  NR   LV  P W+  L+   VE  LG + WS
Sbjct: 879  GFIGNLTFLPLRSLEILRLSGNR---LVTFPVWQVTLNARLVELSLGSNPWS 927


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +2

Query: 158 VVALPRRKSRVKSYLHERFGLGSTLTRKTTNALSSQSVGSGG 283
           + +LP   + + S   E+  +    T+ TTN  + ++   GG
Sbjct: 856 ITSLPASSTSINSITVEKDVINDVKTQITTNTPAKKATNIGG 897


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 531 PYTILEQLKKQHRVISVCIPVSFEPPL 611
           P+T  E L +  R  +VC   + +PPL
Sbjct: 615 PFTFQEGLSEGMRTRTVCGVAAGDPPL 641


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -2

Query: 407 HLELKEYHLEWFSLIIDNRPH 345
           +LE+K Y+++W   I+ +  +
Sbjct: 101 NLEIKNYNIDWDKCILSSESY 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,909
Number of Sequences: 438
Number of extensions: 4820
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)