Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_M20
         (913 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0668 - 4882174-4884204                                           50   3e-06
07_01_0075 - 558829-560859                                             47   2e-05
11_01_0404 + 3071412-3071464,3073572-3074970                           29   6.8  
01_07_0260 - 42364769-42364777,42364884-42365354                       29   6.8  

>06_01_0668 - 4882174-4884204
          Length = 676

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 24/54 (44%), Positives = 33/54 (61%)
 Frame = +2

Query: 203 DPIMRVKVKRMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 364
           D   + K  + A  ++  + K+   +GEADR I T  PKHLF+GKR +GKT RR
Sbjct: 624 DSAQKKKAIKKAKDSVRNRNKE-ARRGEADRVIPTLKPKHLFSGKRSIGKTSRR 676


>07_01_0075 - 558829-560859
          Length = 676

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 23/54 (42%), Positives = 32/54 (59%)
 Frame = +2

Query: 203 DPIMRVKVKRMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 364
           D   + K  + A  ++  + K+   +GEADR I T  PKHLF+GK  +GKT RR
Sbjct: 624 DSAQKKKAIKKAKDSVRNRNKE-ARRGEADRVIPTLKPKHLFSGKSSIGKTSRR 676


>11_01_0404 + 3071412-3071464,3073572-3074970
          Length = 483

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 208 HHARESKEDGARGHRQEDQEDGPQGRGGPVHRHQDAEASVR 330
           HH++    D       ED  DG   +G P HR +  ++ V+
Sbjct: 129 HHSKNHGSDEEEHDMNEDAADGKDKKGSPWHRMKWTDSMVK 169


>01_07_0260 - 42364769-42364777,42364884-42365354
          Length = 159

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 202 RPHHARESKEDGARGHRQEDQEDGPQGRGGPVH 300
           R  H  E +   A GH ++    G  GRG  VH
Sbjct: 18  RQGHGEEDRSKDATGHGEDQDGGGAAGRGEEVH 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,480,401
Number of Sequences: 37544
Number of extensions: 223286
Number of successful extensions: 806
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)