Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_M20
(913 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF120334-1|AAD09830.1| 633|Homo sapiens GTP-binding protein NGB... 52 2e-06
BC038975-1|AAH38975.1| 634|Homo sapiens GTP binding protein 4 p... 52 4e-06
BC033784-1|AAH33784.1| 632|Homo sapiens GTPBP4 protein protein. 52 4e-06
AL359878-5|CAI13664.1| 634|Homo sapiens GTP binding protein 4 p... 52 4e-06
AK001552-1|BAA91752.1| 634|Homo sapiens protein ( Homo sapiens ... 52 4e-06
AF325353-1|AAK13444.1| 634|Homo sapiens G protein-binding prote... 52 4e-06
AK222861-1|BAD96581.1| 634|Homo sapiens G protein-binding prote... 50 1e-05
M76729-1|AAA59993.1| 1838|Homo sapiens pro-alpha-1 type V collag... 31 7.7
D90279-1|BAA14323.1| 1838|Homo sapiens collagen alpha 1(V) chain... 31 7.7
AL645768-1|CAI17261.1| 1838|Homo sapiens collagen type V alpha 1... 31 7.7
AL603650-2|CAI39859.1| 1838|Homo sapiens collagen type V alpha 1... 31 7.7
AL591890-1|CAI15483.1| 1838|Homo sapiens collagen type V alpha 1... 31 7.7
AB209864-1|BAD93101.1| 1792|Homo sapiens Pro-alpha-1 type V coll... 31 7.7
>AF120334-1|AAD09830.1| 633|Homo sapiens GTP-binding protein NGB
protein.
Length = 633
Score = 52.4 bits (120), Expect = 2e-06
Identities = 40/116 (34%), Positives = 49/116 (42%), Gaps = 13/116 (11%)
Frame = +2
Query: 56 LRKDMEKLGVDMSETGDAHFTXXXXXXXXXXXXXXXXXXXXEPS--------NQP----- 196
L K+M LGVDM + DAH+ S P
Sbjct: 520 LEKEMRSLGVDMDDKDDAHYAVQARRSRSITRKRKREDSAPPSSVARSGSCSRTPRDVSG 579
Query: 197 VADPIMRVKVKRMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 364
+ D M K K M +A KK ++G KGEADR + PKHL +GKR GK DRR
Sbjct: 580 LRDVKMVKKAKTMKNAQ--KKMNRLGKKGEADRHVFDMKPKHLLSGKRKAGKKDRR 633
>BC038975-1|AAH38975.1| 634|Homo sapiens GTP binding protein 4
protein.
Length = 634
Score = 51.6 bits (118), Expect = 4e-06
Identities = 40/116 (34%), Positives = 48/116 (41%), Gaps = 13/116 (11%)
Frame = +2
Query: 56 LRKDMEKLGVDMSETGDAHFTXXXXXXXXXXXXXXXXXXXXEPS--------NQP----- 196
L K+M LGVDM + DAH+ S P
Sbjct: 520 LEKEMRSLGVDMDDKDDAHYAVQARRSRSITRKRKREDSAPPSSVARSGSCSRTPRDVSG 579
Query: 197 VADPIMRVKVKRMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 364
+ D M K K M A KK ++G KGEADR + PKHL +GKR GK DRR
Sbjct: 580 LRDVKMVKKAKTMMKNA-QKKMNRLGKKGEADRHVFDMKPKHLLSGKRKAGKKDRR 634
>BC033784-1|AAH33784.1| 632|Homo sapiens GTPBP4 protein protein.
Length = 632
Score = 51.6 bits (118), Expect = 4e-06
Identities = 40/116 (34%), Positives = 48/116 (41%), Gaps = 13/116 (11%)
Frame = +2
Query: 56 LRKDMEKLGVDMSETGDAHFTXXXXXXXXXXXXXXXXXXXXEPS--------NQP----- 196
L K+M LGVDM + DAH+ S P
Sbjct: 518 LEKEMRSLGVDMDDKDDAHYAVQARRSRSITRKRKREDSAPPSSVARSGSCSRTPRDVSG 577
Query: 197 VADPIMRVKVKRMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 364
+ D M K K M A KK ++G KGEADR + PKHL +GKR GK DRR
Sbjct: 578 LRDVKMVKKAKTMMKNA-QKKMNRLGKKGEADRHVFDMKPKHLLSGKRKAGKKDRR 632
>AL359878-5|CAI13664.1| 634|Homo sapiens GTP binding protein 4
protein.
Length = 634
Score = 51.6 bits (118), Expect = 4e-06
Identities = 40/116 (34%), Positives = 48/116 (41%), Gaps = 13/116 (11%)
Frame = +2
Query: 56 LRKDMEKLGVDMSETGDAHFTXXXXXXXXXXXXXXXXXXXXEPS--------NQP----- 196
L K+M LGVDM + DAH+ S P
Sbjct: 520 LEKEMRSLGVDMDDKDDAHYAVQARRSRSITRKRKREDSAPPSSVARSGSCSRTPRDVSG 579
Query: 197 VADPIMRVKVKRMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 364
+ D M K K M A KK ++G KGEADR + PKHL +GKR GK DRR
Sbjct: 580 LRDVKMVKKAKTMMKNA-QKKMNRLGKKGEADRHVFDMKPKHLLSGKRKAGKKDRR 634
>AK001552-1|BAA91752.1| 634|Homo sapiens protein ( Homo sapiens
cDNA FLJ10690 fis, clone NT2RP3000350, weakly similar to
PROBABLE GTP-BINDING PROTEIN HP0303. ).
Length = 634
Score = 51.6 bits (118), Expect = 4e-06
Identities = 40/116 (34%), Positives = 48/116 (41%), Gaps = 13/116 (11%)
Frame = +2
Query: 56 LRKDMEKLGVDMSETGDAHFTXXXXXXXXXXXXXXXXXXXXEPS--------NQP----- 196
L K+M LGVDM + DAH+ S P
Sbjct: 520 LEKEMHSLGVDMDDKDDAHYAVQARRSRSITRKRKREDSAPPSSVARSGSCSRTPRDVSG 579
Query: 197 VADPIMRVKVKRMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 364
+ D M K K M A KK ++G KGEADR + PKHL +GKR GK DRR
Sbjct: 580 LRDVKMVKKAKTMMKNA-QKKMNRLGKKGEADRHVFDMKPKHLLSGKRKAGKKDRR 634
>AF325353-1|AAK13444.1| 634|Homo sapiens G protein-binding protein
CRFG protein.
Length = 634
Score = 51.6 bits (118), Expect = 4e-06
Identities = 40/116 (34%), Positives = 48/116 (41%), Gaps = 13/116 (11%)
Frame = +2
Query: 56 LRKDMEKLGVDMSETGDAHFTXXXXXXXXXXXXXXXXXXXXEPS--------NQP----- 196
L K+M LGVDM + DAH+ S P
Sbjct: 520 LEKEMRSLGVDMDDKDDAHYAVQARRSRSITRKRKREDSAPPSSVARSGSCSRTPRDVSG 579
Query: 197 VADPIMRVKVKRMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 364
+ D M K K M A KK ++G KGEADR + PKHL +GKR GK DRR
Sbjct: 580 LRDVKMVKKAKTMMKNA-QKKMNRLGKKGEADRHVFDMKPKHLLSGKRKAGKKDRR 634
>AK222861-1|BAD96581.1| 634|Homo sapiens G protein-binding protein
CRFG variant protein.
Length = 634
Score = 50.0 bits (114), Expect = 1e-05
Identities = 39/116 (33%), Positives = 49/116 (42%), Gaps = 13/116 (11%)
Frame = +2
Query: 56 LRKDMEKLGVDMSETGDAHFTXXXXXXXXXXXXXXXXXXXXEPSNQPVADPIMR------ 217
L K+M LGVDM + DAH+ PS+ + R
Sbjct: 520 LEKEMRSLGVDMDDKDDAHYAVQARRSRSITRKRKREDSAP-PSSVARSGSCSRTPRDVS 578
Query: 218 ----VKVKRMAHAAIAKKTKKM---GLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 364
VK+ + A + KKM G KGEADR + PKHL +GKR GK DRR
Sbjct: 579 GLRDVKMVKNAKTMMKNAQKKMNRLGKKGEADRHVFDMKPKHLLSGKRKAGKKDRR 634
>M76729-1|AAA59993.1| 1838|Homo sapiens pro-alpha-1 type V collagen
protein.
Length = 1838
Score = 30.7 bits (66), Expect = 7.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 229 EDGARGHRQEDQEDGPQGRGGP 294
E G G R ED +GP+GRGGP
Sbjct: 830 EIGPPGPRGEDGPEGPKGRGGP 851
>D90279-1|BAA14323.1| 1838|Homo sapiens collagen alpha 1(V) chain
precursor protein.
Length = 1838
Score = 30.7 bits (66), Expect = 7.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 229 EDGARGHRQEDQEDGPQGRGGP 294
E G G R ED +GP+GRGGP
Sbjct: 830 EIGPPGPRGEDGPEGPKGRGGP 851
>AL645768-1|CAI17261.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 30.7 bits (66), Expect = 7.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 229 EDGARGHRQEDQEDGPQGRGGP 294
E G G R ED +GP+GRGGP
Sbjct: 830 EIGPPGPRGEDGPEGPKGRGGP 851
>AL603650-2|CAI39859.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 30.7 bits (66), Expect = 7.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 229 EDGARGHRQEDQEDGPQGRGGP 294
E G G R ED +GP+GRGGP
Sbjct: 830 EIGPPGPRGEDGPEGPKGRGGP 851
>AL591890-1|CAI15483.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 30.7 bits (66), Expect = 7.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 229 EDGARGHRQEDQEDGPQGRGGP 294
E G G R ED +GP+GRGGP
Sbjct: 830 EIGPPGPRGEDGPEGPKGRGGP 851
>AB209864-1|BAD93101.1| 1792|Homo sapiens Pro-alpha-1 type V
collagen variant protein.
Length = 1792
Score = 30.7 bits (66), Expect = 7.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 229 EDGARGHRQEDQEDGPQGRGGP 294
E G G R ED +GP+GRGGP
Sbjct: 784 EIGPPGPRGEDGPEGPKGRGGP 805
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,704,904
Number of Sequences: 237096
Number of extensions: 1246218
Number of successful extensions: 3873
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3854
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11825849886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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