Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_M20
         (913 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036706-10|AAM97948.1|  633|Caenorhabditis elegans Hypothetical...    48   1e-05
AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical ...    44   1e-04
AF036706-11|AAO91698.1|   53|Caenorhabditis elegans Hypothetical...    37   0.017
U39851-8|AAF99879.1|  937|Caenorhabditis elegans Hypothetical pr...    30   2.6  
AC024817-53|AAP13744.1|  549|Caenorhabditis elegans Hypothetical...    29   4.6  
AC024817-52|AAF59568.4|  611|Caenorhabditis elegans Hypothetical...    29   4.6  
AC006790-10|AAF60736.1|  371|Caenorhabditis elegans Collagen pro...    28   8.1  

>AF036706-10|AAM97948.1|  633|Caenorhabditis elegans Hypothetical
           protein T07A9.9b protein.
          Length = 633

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 24/49 (48%), Positives = 29/49 (59%)
 Frame = +2

Query: 218 VKVKRMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 364
           V  K+M +        ++G KGEADR +    PKHLF GKRG GKTD R
Sbjct: 585 VDTKKMKNLQGQCAKPQLGKKGEADRHVYDLKPKHLFCGKRGNGKTDWR 633


>AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical
           protein T07A9.9a protein.
          Length = 681

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 24/54 (44%), Positives = 31/54 (57%)
 Frame = +2

Query: 203 DPIMRVKVKRMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 364
           D   R  V ++   A+ +  ++   KGEADR +    PKHLF GKRG GKTD R
Sbjct: 629 DEEKRAHVDKLRTKAM-RGLRREAKKGEADRHVYDLKPKHLFCGKRGNGKTDWR 681


>AF036706-11|AAO91698.1|   53|Caenorhabditis elegans Hypothetical
           protein T07A9.9c protein.
          Length = 53

 Score = 37.1 bits (82), Expect = 0.017
 Identities = 25/55 (45%), Positives = 31/55 (56%)
 Frame = +2

Query: 200 ADPIMRVKVKRMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLFAGKRGVGKTDRR 364
           AD + R K+  +  AA+ +  K   LK +   F   K PKHLF GKRG GKTD R
Sbjct: 4   ADSLYRCKM--LKRAALGRMVKL--LKRQKSSFEYLK-PKHLFCGKRGNGKTDWR 53


>U39851-8|AAF99879.1|  937|Caenorhabditis elegans Hypothetical
           protein C23G10.8 protein.
          Length = 937

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = -2

Query: 363 LRSVLPTPRFPANRCFGILVPMNRSASPLRPIFLVFL-----AMAACAILFTFTRMM 208
           L S  PT  F  +  F IL P N +A  + P+FL+       AMA C  + T  RM+
Sbjct: 637 LGSNSPTENFMTSEYFDILQPWNYTALWINPLFLLAKDGNQEAMAQCTRIKTAPRMV 693


>AC024817-53|AAP13744.1|  549|Caenorhabditis elegans Hypothetical
           protein Y54G2A.26b protein.
          Length = 549

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = +1

Query: 190 PTRGRPHHARESKEDGARGHRQEDQEDGPQGRGGPVHRHQDAE 318
           P RGRP  A  +        R+E Q DG Q  GGPV    D E
Sbjct: 396 PKRGRPCKAPGTTATNKSTKRKESQ-DGGQEVGGPVEDKDDHE 437


>AC024817-52|AAF59568.4|  611|Caenorhabditis elegans Hypothetical
           protein Y54G2A.26a protein.
          Length = 611

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = +1

Query: 190 PTRGRPHHARESKEDGARGHRQEDQEDGPQGRGGPVHRHQDAE 318
           P RGRP  A  +        R+E Q DG Q  GGPV    D E
Sbjct: 458 PKRGRPCKAPGTTATNKSTKRKESQ-DGGQEVGGPVEDKDDHE 499


>AC006790-10|AAF60736.1|  371|Caenorhabditis elegans Collagen
           protein 71 protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 193 TRGRPHHARESKEDGARGHRQEDQEDGPQGRGG 291
           +RG P H  E  E GA G   E+  DG  G  G
Sbjct: 301 SRGTPGHPGEDGEAGAPGAPGENGTDGENGEDG 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,390,292
Number of Sequences: 27780
Number of extensions: 172531
Number of successful extensions: 638
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)