Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_M19
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   3.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    22   8.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.9  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = -2

Query: 749 GXXXGGGXXPPPPPXPXXXKXGXXXXKXVPXXXXGCLG 636
           G    GG  PPPPP P          +  P    G +G
Sbjct: 298 GDSANGGLPPPPPPPPPSNDFWKDSNEPAPADNKGDMG 335


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 22.2 bits (45), Expect(2) = 8.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 731 GXXPPPPPXP 702
           G  PPPPP P
Sbjct: 7   GNPPPPPPPP 16



 Score = 21.4 bits (43), Expect(2) = 8.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 722 PPPPPXPXXXK 690
           PPPPP P   K
Sbjct: 24  PPPPPPPGYVK 34


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = -2

Query: 737 GGGXXPPPPPXPXXXKXGXXXXKXVP 660
           G G  PPPPP P     G       P
Sbjct: 772 GAGPPPPPPPPPAVSAGGSRYYAPAP 797


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,982
Number of Sequences: 5004
Number of extensions: 33751
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)