Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_M19
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    33   0.28 
07_01_0479 + 3606663-3607448                                           31   1.1  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    29   3.4  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           29   4.5  
09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,243...    29   6.0  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 27/77 (35%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
 Frame = -1

Query: 474  GLGGXXX----GGXRGKKXPPLFXGGXTXVLFXKRGGPXXPPRGXXQN*XGXPGGPPXXX 307
            GLGG        G RG   PP   GG           P  PPRG      G  GGPP   
Sbjct: 1156 GLGGPPAPPPPAGFRGGTPPPNAHGGVAP--------PPPPPRGH-----GGVGGPPTPP 1202

Query: 306  SLXXXPXXXGQPXGXPP 256
                 P   G P G PP
Sbjct: 1203 GAPAPPMPPGVPGGPPP 1219



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 28/105 (26%), Positives = 29/105 (27%), Gaps = 9/105 (8%)
 Frame = +2

Query: 362  GGXXGPPLX*KRTXVXPPXKXGGXFXPRXPPXXX---------PPNPXXFFF*KXXLPPP 514
            G    PP     T V PP   GG    + PP            PP P          PPP
Sbjct: 1107 GAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPP 1166

Query: 515  GXXRGGXXXXXXXXPQKNPPRXPXGGGFSXXXXXXXNXPPXPNTP 649
               RGG            PP  P G G           P  P  P
Sbjct: 1167 AGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPP 1211


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/59 (35%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
 Frame = -1

Query: 429 PPLFXGGXTXVLFXKRGGPXXPPRGXXQN*XGXPGGPP--XXXSLXXXPXXXGQPXGXP 259
           PP F GG          GP  PP G  Q   G PGGPP      +   P   G P   P
Sbjct: 194 PPAFPGGPPPPPGPFMRGP--PPMGPPQVRPGMPGGPPPGMRPGMPPPPFRPGMPPPPP 250


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/58 (25%), Positives = 18/58 (31%)
 Frame = +2

Query: 410 PPXKXGGXFXPRXPPXXXPPNPXXFFF*KXXLPPPGXXRGGXXXXXXXXPQKNPPRXP 583
           PP +    F P  P    PP P   ++     PPP              P   PP  P
Sbjct: 64  PPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAP 121


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = +1

Query: 610 PPXXXXPXPPKHPXXXXGTLXFXHXPXXXXXGXGGGGGXXPPPXXXP 750
           PP    P PP H           H P     G G G G  PPP   P
Sbjct: 283 PPPAPPPLPPSHHHHHGHHPPPPH-PLPPGAGAGAGTGAPPPPPAHP 328


>09_01_0165 -
           2436769-2437442,2438159-2438224,2438318-2438415,
           2439856-2440214
          Length = 398

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
 Frame = -1

Query: 384 RGGPXXPPRGXXQN*XGXPGGPPXXXSLXXXPXXXGQP----XGXPPFLGXGXGXIG 226
           RG P  PP     N  G  GG P        P   G P     G P F G   G  G
Sbjct: 311 RGPPPPPPSAYQGNNPGYQGGGPGYHGGNPPPYQAGNPPPYQAGNPVFAGGAPGYQG 367


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,738,605
Number of Sequences: 37544
Number of extensions: 507359
Number of successful extensions: 3040
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2717
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)