Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_M18
(902 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ... 35 0.014
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom... 29 0.68
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ... 28 1.6
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 27 2.8
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 27 3.6
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 27 3.6
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 26 6.4
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 6.4
>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 282
Score = 35.1 bits (77), Expect = 0.014
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 614 QGTCGLFEKVMSDVEAWQELCNLYLQVQDYSRAVSCAE 727
QG + +D+EAW EL ++Y+ V+ + A+ C E
Sbjct: 126 QGLINYLDTFYNDLEAWAELADIYVSVEAFESAIFCYE 163
Score = 33.9 bits (74), Expect = 0.032
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Frame = +3
Query: 315 REDVNKLGNEKHVI---LEQVIYAALDCHMYCIAMLCLVMLSNEFPGSLRVMKLKAAVLE 485
+E KLG K I ++V AAL +A C L++ F S RV L LE
Sbjct: 23 QEAYAKLGKYKDEIWDVYQKVFIAALTTGETVLAKKCWNRLNDRFHKSPRVEGLYGMFLE 82
Query: 486 AEEKFDEALELLDNIIKVDETNSXXXXXXXXXXXXQGYIVEAIKELVDYL 635
A +A+ ++ + D T++ G E I+ L++YL
Sbjct: 83 ATASEKDAMSYYNSKLSEDPTHTVIYKRKLALLRSMGQTKECIQGLINYL 132
>SPCC330.10 |pcm1||mRNA capping
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 389
Score = 29.5 bits (63), Expect = 0.68
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = -3
Query: 447 YQETHWIASQGTTLLCSTCDSPMLHRLLAPI*R---VSRFQVCLHLL*EPHPKVLALLCL 277
Y+E H AS C S ++ LL P R V Q C+H E KV LL
Sbjct: 182 YREMH--ASFDALFYAGDCFSSSINELLPPDQRKFDVVSLQFCMHYAFESEEKVRVLLGN 239
Query: 276 SSHCFP 259
S C P
Sbjct: 240 VSKCLP 245
>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 649 RCGSLARALQPVPSGSGLLSCRVLRR 726
+CGS+ L P P G+GL++ V +R
Sbjct: 160 KCGSVTVRLVPAPRGAGLVAAPVTKR 185
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 612 IKELVDYLKKLCQMWKPGKSFATCTFRFRT 701
I + Y KK Q + PG SF+T F RT
Sbjct: 404 ISHYLFYSKKYSQFYTPGYSFSTPNFNTRT 433
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 702 TLVPCPAPXNYSSISLTXHLHHQRLTDIRYTMGGIQ 809
T P P P + L + ++ +I+YTM G+Q
Sbjct: 451 TYHPQPIPPQLQQVQLLSQMAGNQMANIQYTMNGMQ 486
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +3
Query: 363 QVIYAALDCHMYCIAMLCLVMLSNEFPGSLRVMKLKAAVLEAEEKFDEALELLDNIIKVD 542
Q+ A H +M FP S V +L ++KFD+A++ D+ I+++
Sbjct: 454 QLGVAQYKTHAIAESMKTFEDCKKRFPNSSEVYNYFGEILLDQQKFDDAVKNFDHAIELE 513
Query: 543 E 545
+
Sbjct: 514 K 514
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 6.4
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Frame = +3
Query: 201 SFNYEEISHNEAKDLLRQWRENNERRGKEVLE----LWDVVLREDVNKLGNEKHVILEQV 368
S + ++ + + +LR+ + +E GK +L D V +D++ L KH + E V
Sbjct: 416 STSISAMTSEKQEQILRECPDIDEELGKSILREIVVSGDEVHWDDISGLEFAKHSLKEAV 475
Query: 369 IYAALDCHMY-CIAMLCLVMLSNEFPGSLRVMKLKAAVLEAEEKF 500
+Y L ++ + ML PG+ + M +A E+ F
Sbjct: 476 VYPFLRPDLFQGLREPARGMLLFGPPGTGKTMLARAVATESRSVF 520
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +2
Query: 275 ERQRSARTLGCGSQRRCKQTWKRETRYIGASNLCSIGLSHVLHSNVVPC 421
E+ ++ R W+ + R G SN+CS +S + +N+ C
Sbjct: 2548 EKDNTSELCSLCDSRFSLMEWRSQCRACGNSNVCSDCVSMLKDTNIKTC 2596
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,454,721
Number of Sequences: 5004
Number of extensions: 68072
Number of successful extensions: 189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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