Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_M18
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077542-13|AAC26302.1|  294|Caenorhabditis elegans Hypothetical...   125   4e-29
Z83120-3|CAB05587.1|  419|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z83120-2|CAB05586.1|  883|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AF077542-13|AAC26302.1|  294|Caenorhabditis elegans Hypothetical
           protein Y57G7A.10a protein.
          Length = 294

 Score =  125 bits (302), Expect = 4e-29
 Identities = 71/230 (30%), Positives = 120/230 (52%), Gaps = 1/230 (0%)
 Frame = +3

Query: 210 YEEISHNEAKDLLRQWRENNERRGKEVLELWDVVLREDVNKLGNEKHVILEQVIYAALDC 389
           + ++S++E +  L++WRE   RR  EV+E+W+ V+      LG+E+  +LEQV  AALD 
Sbjct: 6   WTQVSYDEGRQALKKWRECGVRRSDEVVEIWEHVISRSPASLGDEQWAVLEQVCIAALDA 65

Query: 390 HMYCIAMLCLVMLSNEFPGSLRVMKLKAAVLEAEEKFDEALELLDNIIKVDETNSXXXXX 569
               +A  C+  L  +FP S RV+KLKA  LE+ E + +AL++ + +++ +  N+     
Sbjct: 66  ARVDLAQDCIDQLHAQFPKSNRVLKLKAMQLESTEHYQKALDIYERLVEDEPNNNSFRKR 125

Query: 570 XXXXXXXQGYIVEAIKELVDYLKKLCQMWKPGKSFATCTFRFRTTLVPCPAPXNYSSISL 749
                  QG  ++AI+ + DYLK      +     +                     IS 
Sbjct: 126 KVAVLLAQGKRLDAIRAINDYLKIFLNDPEAWLQLSELFLLENDVAKAVHCLEECVLISP 185

Query: 750 TXHLHHQRLTDIRYTMGGIQNLELAKLFYCQSVKLXP-XIXGPAGFLLXN 896
              ++ +RL D+RYT GG +N+ELA+ +Y +++K+ P  +    G LL N
Sbjct: 186 LNSMYFRRLADLRYTQGGAENVELARSYYERALKINPTDLRSQYGILLSN 235



 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 644 MSDVEAWQELCNLYLQVQDYSRAVSCAE 727
           ++D EAW +L  L+L   D ++AV C E
Sbjct: 151 LNDPEAWLQLSELFLLENDVAKAVHCLE 178


>Z83120-3|CAB05587.1|  419|Caenorhabditis elegans Hypothetical
           protein R06A4.4b protein.
          Length = 419

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 305 CGSQRRCKQTWKRETRYIGASNLCSIGLSHVLHSNVVPCDAIQ*VSW 445
           C S R  K   ++E+ +IG  N+ ++    VL+  +  CDAI   SW
Sbjct: 327 CYSLRNIKDNAEKESAFIGLCNMINMNPVGVLNDFIFWCDAI--ASW 371


>Z83120-2|CAB05586.1|  883|Caenorhabditis elegans Hypothetical
           protein R06A4.4a protein.
          Length = 883

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 305 CGSQRRCKQTWKRETRYIGASNLCSIGLSHVLHSNVVPCDAIQ*VSW 445
           C S R  K   ++E+ +IG  N+ ++    VL+  +  CDAI   SW
Sbjct: 791 CYSLRNIKDNAEKESAFIGLCNMINMNPVGVLNDFIFWCDAI--ASW 835


>Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical
           protein T05H10.1 protein.
          Length = 1326

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 218 NKPQ*SKGSSPSME-GKQ*EERQRSARTLGCGSQRRCKQTWKRETRYIGASNLC 376
           NK + S  SS   + GK   E +     LG  + +RC    +   RY G+ N+C
Sbjct: 329 NKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVC 382


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,377,479
Number of Sequences: 27780
Number of extensions: 390601
Number of successful extensions: 988
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)