Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_M18
         (902 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.94 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    25   1.2  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   6.7  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   6.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   8.8  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 729 NYSSISLTXHLHHQRLTDIRYTMGGIQNLELAKLFYCQSVKL 854
           N +   LT H   +R   + YTMG I+  E+A+ FY + +++
Sbjct: 123 NETRQGLTLHYRSKRRGFVYYTMGQIR--EVARHFYHKELQI 162


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 287 SARTLGCGSQRRCKQTWKRETRYIGASNLCSIGLSHVLHS 406
           S RT   G+ R+C ++   +   IG SN       H++ S
Sbjct: 242 STRTAETGTIRKCDESSPHDQVIIGGSNGLDTSKVHIIDS 281


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 305 IPKF*HFFASPLIVFPPLTEKI 240
           +  F  F+ +P   F P+TEK+
Sbjct: 285 LANFMRFYYNPFTPFGPVTEKV 306


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 305 IPKF*HFFASPLIVFPPLTEKI 240
           +  F  F+ +P   F P+TEK+
Sbjct: 285 LANFMRFYYNPFTPFGPVTEKV 306


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 808 WMPPIVYRISVSL 770
           W PP VY+ S S+
Sbjct: 143 WQPPAVYKSSCSI 155


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 365 SNLCSIGLSHVLHSNVVP 418
           S + ++ LSH LH N++P
Sbjct: 350 SAILAMRLSHPLHGNLLP 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,874
Number of Sequences: 438
Number of extensions: 4834
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)