Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_M17
(926 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p... 165 6e-42
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 30 0.40
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos... 27 2.8
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi... 27 3.8
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 27 3.8
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 27 5.0
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 27 5.0
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 26 6.6
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 26 6.6
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 6.6
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 26 6.6
>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 165 bits (402), Expect = 6e-42
Identities = 80/188 (42%), Positives = 121/188 (64%), Gaps = 3/188 (1%)
Frame = +3
Query: 333 KVLYLFDVDGTLTKPRQKITEEFRRFILDEVKSKVDVGLVSGSDYMKISEQMG--GEDVV 506
K L LFDVDGTLT R ++ E L ++ V +G V GSD K EQ+ GE+V+
Sbjct: 13 KTLVLFDVDGTLTPARLSVSPEMLE-TLQNLRKVVAIGFVGGSDLSKQQEQLSVNGENVI 71
Query: 507 SNFNYVFSENGLVHHKNGKKLSSESIVNHLGEQKLQEVINFAMGYMSNIKLPVKRGNFIE 686
+F+Y F+ENGL ++ G++L+S+S + LGE+K Q+++NF + Y++++ +PVKRG FIE
Sbjct: 72 DSFDYAFAENGLTAYRYGQQLASQSFIAWLGEEKYQKLVNFCLHYIADLDIPVKRGTFIE 131
Query: 687 FRSSMLNICPVGRSCNQIERDQFSEYDSKHKVRQQFVEALQSKFKDSGLSL-LXVANQY* 863
FR+ M+NI PVGR+ N ER++F +D K+R V+ L+ KFKD GL+ + +
Sbjct: 132 FRNGMINISPVGRNANTEERNEFERFDKGRKIRATMVDVLREKFKDYGLTFSIGGQISFD 191
Query: 864 CVPXGWXR 887
P GW +
Sbjct: 192 VFPAGWDK 199
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 30.3 bits (65), Expect = 0.40
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = -2
Query: 448 NPTSTFDFTSSRMNLLNSSVIFWRGFVNVPSTSNKYKTFF*LAIIVSKGEISLNFGGNFG 269
NP+STFD +++ N N++ F F N + + F + ++ G S G F
Sbjct: 124 NPSSTFDMSTNLFNSKNANTSFTNAFSNEGISPGFLRDCFPSSNSITTGTASPKLGSPFN 183
Query: 268 PVDK 257
+++
Sbjct: 184 HINR 187
>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 27.5 bits (58), Expect = 2.8
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +3
Query: 441 VGLVSGSDYMKISEQMGGEDVVSNFNYVFSENGLVHHKNGKKLSSESIVNHLGEQ-KLQE 617
+G VSG ++ ++ E + F+ + +NGL+ N ++ E++ HLG Q + +
Sbjct: 240 IGAVSGGVDSTVASKVLKEAIGDRFHAIMVDNGLL-RLNEAEIVRETLNKHLGIQLTVVD 298
Query: 618 VINFAMGYMSNIKLPVKRGNFI 683
+G + + P K+ I
Sbjct: 299 ASEEFIGKLKGVTDPEKKRKII 320
>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
Bub3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 320
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 240 SLAVSYLSTGPKLPPKFKLISPFETIMASQKKVLYLFDVDGTLT 371
SL +S P+L K+ L SP ++ + +K + ++DGT+T
Sbjct: 36 SLLHYQISENPELLGKYDLSSPILSLEYTDEKTALVGNLDGTVT 79
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 27.1 bits (57), Expect = 3.8
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -2
Query: 571 LNFFPFL*CTSPFSLNT*LKLDTTSSPPICSEIFI*SEPLTNPTSTFDFTSSR 413
+NF P + FSLN LK + PP+ S + TNP S + R
Sbjct: 569 VNFAPKDWLLNGFSLNGVLKYQSLLKPPVLSHDMLVYNLATNPASEISVSELR 621
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 31 GILKIFDSPNSKRTLRALSDNTVSVMKK 114
G++ FDS NS LR +D+T S++ K
Sbjct: 23 GVITNFDSSNSILQLRLANDSTKSIVTK 50
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 26.6 bits (56), Expect = 5.0
Identities = 21/72 (29%), Positives = 30/72 (41%)
Frame = +3
Query: 351 DVDGTLTKPRQKITEEFRRFILDEVKSKVDVGLVSGSDYMKISEQMGGEDVVSNFNYVFS 530
DV GT Q EE L ++ + DV + D + E VVSN +
Sbjct: 440 DVKGTAQSVEQAFIEE-TDIALPDI-ALPDVATPTADDQDPSTAATNEESVVSNEDRTSK 497
Query: 531 ENGLVHHKNGKK 566
+ G HH++ KK
Sbjct: 498 KAGKKHHRHHKK 509
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -2
Query: 610 SFCSPKWLT---MLSELNFFPFL*CTSPFSLN 524
S CSP W++ +L+ L F P + C++ LN
Sbjct: 121 STCSPLWISVIYLLNPLTFLPGIACSADMILN 152
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2
Query: 268 PVDK*DTAREHQVPTLHSDTSNRNSKHQTSVQRTDKL 158
P+ + D+ EH P H+++ N S+H T R + +
Sbjct: 183 PIHRIDS--EHNEPEYHTESKNEESEHNTKSIREEPI 217
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 6.6
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +3
Query: 531 ENGLVHHKNGKKLSSESIVNHLGEQKLQEVI--NFAMGYMSNIKLPVKRGNFIEFRSSML 704
E+G+ + G++ +++IV H+G Q L+ + N + + R F + R +
Sbjct: 39 EDGIEESELGEEKDNKTIVLHIGSQNLRIGLASNKTPTTVPMVIARKMRAPFAQERCLLK 98
Query: 705 NICPVGRSCNQIERDQFSEYDSKHKV 782
+IC V N + D SE+DS K+
Sbjct: 99 DICHVNEDGN-VAFD--SEFDSNLKL 121
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -3
Query: 264 SISRTPPENIKCQHFTQTRQTVTVNTKLQYRELINFNNASYRHQTCPYLL 115
SI N+K +T T T+ N L Y IN+ Y+H YL+
Sbjct: 247 SIDGCEYNNVKALVWTTTPWTIPSNLALSYHPEINY--GLYQHNNSIYLM 294
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,643,291
Number of Sequences: 5004
Number of extensions: 77656
Number of successful extensions: 203
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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