Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_M17
         (926 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1626 + 34863691-34863762,34863895-34863939,34864047-348641...   184   9e-47
02_01_0309 - 2065874-2065930,2066024-2066200                           32   0.74 
02_04_0364 + 22374735-22374749,22374903-22375076,22377858-223779...    30   3.0  
07_03_0815 + 21707061-21707112,21707394-21708286,21709289-217094...    29   4.0  
08_02_0632 + 19515234-19515374,19515489-19515656,19518907-195189...    29   5.2  
12_01_0121 - 920988-921296,921556-921620,921874-921923,922009-92...    28   9.2  

>04_04_1626 +
           34863691-34863762,34863895-34863939,34864047-34864113,
           34864234-34864310,34864570-34864605,34864687-34864742,
           34864816-34864915,34864995-34865090,34865167-34865256,
           34865466-34865517,34866101-34866156
          Length = 248

 Score =  184 bits (448), Expect = 9e-47
 Identities = 88/193 (45%), Positives = 134/193 (69%), Gaps = 3/193 (1%)
 Frame = +3

Query: 318 MASQKK--VLYLFDVDGTLTKPRQKITEEFRRFILDEVKSKVDVGLVSGSDYMKISEQMG 491
           MA++K   VL LFDVDGTLT PR+ +T E  +F + +++  V VG+V GSD +KISEQ+G
Sbjct: 1   MAARKNAGVLALFDVDGTLTAPRKVVTPEMLQF-MKQLREHVTVGVVGGSDLVKISEQLG 59

Query: 492 GEDVVSNFNYVFSENGLVHHKNGKKLSSESIVNHLGEQKLQEVINFAMGYMSNIKLPVKR 671
            + V ++++Y FSENGLV HKNG+ + ++S+ + LG+ +L+E INF + Y++++ +P+KR
Sbjct: 60  -KSVTTDYDYCFSENGLVAHKNGELIGTQSLKSFLGDDQLKEFINFTLHYIADLDIPIKR 118

Query: 672 GNFIEFRSSMLNICPVGRSCNQIERDQFSEYDSKHKVRQQFVEALQSKFKDSGLSL-LXV 848
           G FIEFRS MLN+ P+GR+C+Q ERD+F +YD  H +R + V  L+ KF    L+  +  
Sbjct: 119 GTFIEFRSGMLNVSPIGRNCSQEERDEFEKYDKVHNIRPKMVSVLREKFAHLNLTFSIGG 178

Query: 849 ANQY*CVPXGWXR 887
              +   P GW +
Sbjct: 179 QISFDVFPQGWDK 191


>02_01_0309 - 2065874-2065930,2066024-2066200
          Length = 77

 Score = 31.9 bits (69), Expect = 0.74
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
 Frame = +3

Query: 684 EFRSSMLNICPVGRSCN----QIERDQFSEY-DSKHKVRQQFVEALQSK 815
           E  + +LNI  + R CN    Q+ R+QF+E  DS++K RQQF E+   K
Sbjct: 30  ELDNLVLNI--ITRKCNSSVAQLNREQFAENKDSRYKKRQQFEESSPHK 76


>02_04_0364 +
           22374735-22374749,22374903-22375076,22377858-22377935,
           22379270-22380407,22380507-22380901,22382230-22382416,
           22382872-22382942,22383705-22383755
          Length = 702

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
 Frame = +3

Query: 561 KKLSSESIVNHLGEQKLQEVINFAMGYMSNIKLPVKRGN--FIEFRSSMLNICPVG-RSC 731
           K+  S+S+ N    ++LQE ++ A   ++++++ ++R N    + RS++        RSC
Sbjct: 91  KEAESQSLANINKIKELQEQLHGAQDTVASLQIELQRSNTELEQARSTLAEERRNNLRSC 150

Query: 732 NQIERDQFSEYDSKHKVRQQFVEALQSKFKDSG 830
           N+I  ++ S   S+  ++ +     ++  K+SG
Sbjct: 151 NKINSNKNSSSSSRKHLQGRVSSKSKNTAKESG 183


>07_03_0815 +
           21707061-21707112,21707394-21708286,21709289-21709459,
           21709880-21710143,21710404-21710421
          Length = 465

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -2

Query: 688 NSMKLPLLTGNLMLD-M*PIAKFIT-SCSFCSPKWLTMLS 575
           N M L  + G L L+ + P  KF+T SC FCS  WL  ++
Sbjct: 200 NWMNLSAVRGLLRLNAVVPRLKFLTVSCCFCSSTWLVAMA 239


>08_02_0632 +
           19515234-19515374,19515489-19515656,19518907-19518993,
           19519551-19519685,19519778-19519882,19519968-19520059,
           19520147-19520252,19520320-19520424,19520516-19520929
          Length = 450

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 383 KNYRRIQEVHS*RGKIKSGCRIGQWFRLYEDFRTNGRRGRR--VQFQLR 523
           KNYR  Q +   R +    C+  +    Y DF+ N RR R   V FQLR
Sbjct: 86  KNYRNYQNLSYAREEALKDCKKVEKDSPYYDFQYNTRRARPSIVHFQLR 134


>12_01_0121 -
           920988-921296,921556-921620,921874-921923,922009-922106,
           923832-923867,925351-925731,925839-926324,926471-926647
          Length = 533

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 19/98 (19%), Positives = 38/98 (38%)
 Frame = +3

Query: 471 KISEQMGGEDVVSNFNYVFSENGLVHHKNGKKLSSESIVNHLGEQKLQEVINFAMGYMSN 650
           K+S+++  +++V + + +   NG+ H              H G   + +  +  +GY   
Sbjct: 356 KMSKKVRHDEIVEHVSSILKSNGIAHSGESIDTGKLECYQHGGGMSIGKSDSQRVGYGET 415

Query: 651 IKLPVKRGNFIEFRSSMLNICPVGRSCNQIERDQFSEY 764
           I+      +  E    +L   P   S  +  RD F  Y
Sbjct: 416 IEADKSSSDIGEVSKMILGKQPPKGSAIREVRDMFFPY 453


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,048,779
Number of Sequences: 37544
Number of extensions: 433423
Number of successful extensions: 948
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)