Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_M13
(904 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 36 0.006
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 33 0.056
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.17
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc... 31 0.22
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 31 0.30
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 30 0.39
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch... 29 0.68
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 29 0.68
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 29 0.90
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 29 0.90
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 29 1.2
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 28 2.1
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 6.4
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 26 6.4
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 26 6.4
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 26 6.4
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 36.3 bits (80), Expect = 0.006
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +1
Query: 259 TWEQLRMLESTFEKTNYIHVSHRRELAQKLGIDEKCIRNWFQNRRMKKK----RQSSESS 426
T +QL L F K + R ++ ++L I E+ + WFQNRR K K RQ E
Sbjct: 174 TADQLAYLLREFSKDTNPPPAIREKIGRELNIPERSVTIWFQNRRAKSKLISRRQEEERQ 233
Query: 427 DSLAEPETMN 456
L E ++
Sbjct: 234 RILREQRELD 243
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 33.1 bits (72), Expect = 0.056
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +1
Query: 442 PETMNPQPSSNSPVINPDYNFVLPSNHG--ENLYATSDAAQTSTNSLDAELCYDTNMNYT 615
P P PSS + + +PS +G NLY S+++ N L +NY
Sbjct: 299 PSMTGPVPSS----MGSEATLNMPSTYGIDSNLYTNSNSSSIVQNPLQPARTGPAAINYN 354
Query: 616 YTQYYPINTLTYNSPVQD 669
YT Y +++ + +P D
Sbjct: 355 YTTNYSVSSPSVTNPFFD 372
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 31.5 bits (68), Expect = 0.17
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 394 MKKKRQSSESSDSLAEPETMNPQPSSNS-PVINPDYNFVLPSNHGENLYATSDAAQTSTN 570
++ +Q + SS S A P + + SN PV+ P ++ +N G N +T +N
Sbjct: 195 LESSQQKAPSSSSTATPASAASEIISNKDPVVEPTHSASNAANSGSNTIRARQTTRTRSN 254
Query: 571 SL 576
+L
Sbjct: 255 TL 256
>SPBC21B10.13c |||transcription factor, homeobox type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 31.1 bits (67), Expect = 0.22
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +1
Query: 277 MLESTFEKTNYIHVSHRRELAQKL--GIDEKCIRNWFQNRRMKKKRQSSESSDSL 435
+LE F KT + R+EL++KL + + ++ WFQN+R +R + S + L
Sbjct: 47 LLEQYFLKTPKPSLIERQELSKKLKSSMTPRELQIWFQNKRQSLRRSNCLSRNRL 101
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 30.7 bits (66), Expect = 0.30
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Frame = +1
Query: 382 QNRRMKKKRQSSESSDSLAEPETMNPQPSSNSPVINPDYNFVLPSNHGENLYA---TSDA 552
Q ++ +K++ S S + A P N Q + + V N Y F +N G N A T +
Sbjct: 376 QLKKKRKRKAKSMVSGNQALPGEANFQSLNQNNVRN--YPFY-QTNQGSNPPAKRFTQEP 432
Query: 553 AQTSTNSL-DAELCYDTNMNYTYTQYYPINTLTYNSPVQDTSCQYYEKNN 699
+S SL ++ + Y T Y YP + P+ + S YY + N
Sbjct: 433 PSSSLYSLSESSINYSTQSPMYYNYNYPQPSFPPFHPIYNDSIGYYSQAN 482
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 30.3 bits (65), Expect = 0.39
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +1
Query: 412 SSESSDSLAEPETMNPQPSSNSPVINPDYNFVLPSNHGENLYATSDAAQTSTNSLDAELC 591
SS SSDS +E + + SSNS D + + E+ SD+ +S++S +
Sbjct: 255 SSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSS 314
Query: 592 YDTNMN 609
D N N
Sbjct: 315 EDGNSN 320
>SPAC22F8.12c |shf1||small histone ubiquitination factor
Shf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 29.5 bits (63), Expect = 0.68
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +1
Query: 400 KKRQSSESSDSLAEPETMNPQPSSNSPVINPDYNFVLPSNHGENLYATSDAAQTSTN 570
+ RQS +P S+NS N Y++ +PSN+ A+ AA T TN
Sbjct: 36 RSRQSYHQRTKTPRSSYDSPSSSTNSKEHNSPYHYRVPSNNSTR--ASFGAASTDTN 90
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 29.5 bits (63), Expect = 0.68
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +1
Query: 415 SESSDSLAEPETMNPQPSSNSPVINPDYNFVLPSNHGENLYATSDAAQTSTNSLDAELCY 594
S S+DSLA + PSS PV + D++++ PS+ + + TS A +T+ Y
Sbjct: 2 SISNDSLASTVPGDELPSSY-PVFSSDFSYIKPSHVLDVVTVTSTAGPEATDDPSYSGFY 60
Query: 595 DT 600
T
Sbjct: 61 ST 62
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 29.1 bits (62), Expect = 0.90
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +1
Query: 289 TFEKTNYIHVSHRRELAQKLGIDEKCIRNWFQNRRMKKKRQSSESSDSLAEPETMNPQPS 468
+F+ +YI+ HR L K D + +RNW + + ++ S S+ S + ++ P
Sbjct: 2 SFQNPSYINAKHRSFLQPKDTQDSQDLRNWVSHSSVDEETAYSSSTLSSSSSKSF-PCYD 60
Query: 469 SNSPVINPD 495
+ +PD
Sbjct: 61 EYDEIKSPD 69
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 29.1 bits (62), Expect = 0.90
Identities = 26/79 (32%), Positives = 39/79 (49%)
Frame = +1
Query: 373 NWFQNRRMKKKRQSSESSDSLAEPETMNPQPSSNSPVINPDYNFVLPSNHGENLYATSDA 552
N FQ R++ +S S DSL E E+ PS+ I+P F PS +SDA
Sbjct: 473 NNFQQRKLTPL-PNSMSFDSLNEFESERNTPSTYGQNISPLPQFSSPS-------LSSDA 524
Query: 553 AQTSTNSLDAELCYDTNMN 609
T++NS ++ L + +N
Sbjct: 525 FLTNSNSSESALVHMQKLN 543
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 28.7 bits (61), Expect = 1.2
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Frame = +1
Query: 412 SSESSDSLAEPETMNPQPSSNSPVINPDYNFVLPS-NHGENLYATSDAAQTSTNSLDAEL 588
SSE SDS + T+ S NSP ++ S E+ Y +S ++ + + L
Sbjct: 187 SSEPSDSSSSTNTVILTTSVNSPAVSSSETLTSVSITSTESAYTSSSVDIAASTTASSTL 246
Query: 589 CYDTN-MNYTYTQYYPINTLTYNSPVQDTSCQYYEKNN 699
T+ +++ P T +SP +S E ++
Sbjct: 247 PVSTSEATVSFSTDIPATPSTLSSPASSSSSYLVETSS 284
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 228 EEMQTFTDKLYMGTITDVREYIREDKLHSRKPPARASSEIGH 353
EE F L I D+R + D ++SR + A S GH
Sbjct: 400 EEQDEFLQSLSQEEIDDLRAMVHSDHIYSRLTNSLAPSVYGH 441
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 610 SSYWCRNKVLHRVN 569
S YWCR++ HRV+
Sbjct: 391 SEYWCRSRKFHRVD 404
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 90 KHFVRKLLYYPSKKSKILRIPYSE 19
KH RKLL+YPS S +R+ + +
Sbjct: 580 KHTGRKLLWYPSMGSADVRVNFKD 603
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 517 NHGENLYATSDAAQTSTNSLDAELCYDTNMN 609
N+ +N AT+D Q +T+++ + Y NM+
Sbjct: 805 NNVDNTQATTDNTQANTDNMQVAIDYSQNMD 835
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 26.2 bits (55), Expect = 6.4
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +3
Query: 180 HSSGMRYKKRVHKNYKEEMQTFTDKLYMGTITD--VREYIREDKLHSRKPPARASSEIGH 353
HS + ++ + + + EE++ T+KLY T+ + I +D HS S+++
Sbjct: 331 HSDFPKLREMLIRTHLEELKEQTNKLYEAYRTERLLSSGISQD--HSVFREVNPSAKLEE 388
Query: 354 *RKMHQKLVPK*ENEKEKAIFRVK 425
R +H++ + K E E K IF K
Sbjct: 389 ERALHEEKLMKMEAEM-KTIFSQK 411
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,668,315
Number of Sequences: 5004
Number of extensions: 80724
Number of successful extensions: 260
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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