Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_M10
         (942 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U42841-13|AAC48170.1|  682|Caenorhabditis elegans Hypothetical p...    29   4.8  

>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 884 TGGLGXHPXFGXERPYPG 831
           TG  G HP FG +RP PG
Sbjct: 339 TGKRGSHPGFGPQRPRPG 356


>U42841-13|AAC48170.1|  682|Caenorhabditis elegans Hypothetical
           protein T17H7.1 protein.
          Length = 682

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = -2

Query: 890 G*TGGLGXHPXFGXERPYPG----XGNLTXGXMGKGPRXPXGXKGGQ 762
           G  GG G  P FG +  +PG     G    G  G+GP    G +GG+
Sbjct: 372 GRRGGRGQGPDFGPQDDFPGRRGSGGPGGRGGRGQGPDFGPGRQGGR 418



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = -2

Query: 893 SG*TGGLGXHPXFGXERPYPG----XGNLTXGXMGKGPRXPXGXKGGQ 762
           SG  GG G  P FG +  +PG     G       G+GP    G +GG+
Sbjct: 518 SGGPGGRGQGPDFGPQDDFPGRRGSGGPEGRDGRGQGPDFGPGSQGGR 565


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,168,923
Number of Sequences: 27780
Number of extensions: 144836
Number of successful extensions: 227
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)