Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_M08
         (957 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.25 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    25   0.77 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.25
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +1

Query: 553 PXPPPPXXXXPPXPPXXXXXXPXXXXPPPXXPPXXPP 663
           P P P     P  P       P    PPP  PP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNP-SQGPPPGGPPGAPP 56



 Score = 25.0 bits (52), Expect = 1.0
 Identities = 12/41 (29%), Positives = 12/41 (29%)
 Frame = +2

Query: 539 PXXXXPPPPPPXXXXPPXPXXXXXXPPXXXPPXPXPPXXXP 661
           P    P P P     P  P       P   PP   PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.2 bits (50), Expect = 1.8
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +3

Query: 777 PPPXPXXXXPPXPPXXXXPXXPPXXXPPXXXXPPPP 884
           P P P     P  P    P  P    PP      PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 14/51 (27%), Positives = 14/51 (27%)
 Frame = +3

Query: 726 PXXXXPPXXXPXXXXXXPPPXPXXXXPPXPPXXXXPXXPPXXXPPXXXXPP 878
           P     P   P       PP P    PP  P    P  PP   P      P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP----PGAPPSQNPSQMMISP 67



 Score = 21.8 bits (44), Expect = 9.4
 Identities = 11/41 (26%), Positives = 11/41 (26%)
 Frame = +2

Query: 617 PXXXPPXPXPPXXXPPXPXXRAPXXXXXXXXXPPPPPXXPP 739
           P    P P P     P    R           P  PP  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 9.4
 Identities = 10/34 (29%), Positives = 10/34 (29%)
 Frame = +3

Query: 708 PXPPPPPXXXXPPXXXPXXXXXXPPPXPXXXXPP 809
           P P P      P    P      PPP      PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 9.4
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = +1

Query: 211 PXTXXXPEPXXQNXXPPPXGPP 276
           P       P   +  PPP GPP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPP 52


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 25.4 bits (53), Expect = 0.77
 Identities = 18/61 (29%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
 Frame = +3

Query: 708 PXPPPP-PXXXXPPXXXPXXXXXXPPPXPXXXXPPXPPXXXXPXXPPXXXPPXXXXPPPP 884
           P P PP P     P   P        P P    PP P     P   P    P     P P
Sbjct: 107 PQPRPPHPRLRREPEAEPGNNRPVYIPQPR---PPHPRLRREPEAEPGNNRPVYIPQPRP 163

Query: 885 P 887
           P
Sbjct: 164 P 164



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 18/86 (20%), Positives = 18/86 (20%)
 Frame = +3

Query: 630 PPXXXPPXXXPXXPXXGPXXXXXXXXPXPPPPPXXXXPPXXXPXXXXXXPPPXPXXXXPP 809
           P    P       P   P        P P PP                  P       PP
Sbjct: 53  PRPPHPRLRREAEPKAEPGNNRPIYIPQPRPPHPRLRREAESEAEPGNNRPVYIPQPRPP 112

Query: 810 XPPXXXXPXXPPXXXPPXXXXPPPPP 887
            P     P   P    P     P PP
Sbjct: 113 HPRLRREPEAEPGNNRPVYIPQPRPP 138


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 539 PXXXXPPPPPPXXXXP 586
           P    PPPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 713 PPPPPXXPPPPXXXXP 760
           PP P   PPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 855 PPXXXXPPPPPXXXXP 902
           PP    PPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = -2

Query: 683 GPGXGGXGGXXGGXXGGGXXXXGXXXXXXGGXG 585
           GPG    GG   G  GG            GG G
Sbjct: 21  GPGSSSAGGVVTGASGGSIVVGANNGGGGGGLG 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,507
Number of Sequences: 438
Number of extensions: 12883
Number of successful extensions: 28
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31444140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)