Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_M07
(937 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 39 0.001
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.014
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 28 1.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.6
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 28 2.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.8
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 38.7 bits (86), Expect = 0.001
Identities = 27/74 (36%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Frame = -2
Query: 930 GXXGXXXPPPXGXXGXXGXXXXXXGXXXGGXXGGPXGGXXGGXPXFFXXPGGXXPPXXGG 751
G G P P G G G G GG GG GG F PGG G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGF---GGGL 251
Query: 750 GXFXWXPG--GGGP 715
G F PG GGGP
Sbjct: 252 GGFGGGPGGFGGGP 265
Score = 33.5 bits (73), Expect = 0.044
Identities = 27/75 (36%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Frame = -2
Query: 936 PXGXXGXXXPPPXGXXGXXGXXXXXXGXXXGGXXGGPXGGXXGGXPXFFXXPGGXXPPXX 757
P G G G G G GG GGP G GG P F GG
Sbjct: 201 PPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGP--GGFGGGPGGFG--GGLGGFGG 256
Query: 756 GGGXFXWXPGG-GGP 715
G G F PGG GGP
Sbjct: 257 GPGGFGGGPGGHGGP 271
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.1 bits (77), Expect = 0.014
Identities = 19/60 (31%), Positives = 19/60 (31%)
Frame = +3
Query: 720 PPPPXAXXXXPXLXGGGXXPRGXXKXXGFPPXXPPGXPPXXPPXXPXXXXXGXXXXPXPP 899
PPP P L G R PP PP PP PP P G P P
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450
Score = 31.5 bits (68), Expect = 0.18
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +2
Query: 806 PPXXPPXGPPXXPPXXXPXXXXXXPXXPXXPXGGGXXXPXXPXG 937
PP PP PP PP P P P P P P G
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP-SAPIAPPLPAG 462
Score = 25.8 bits (54), Expect = 8.8
Identities = 17/63 (26%), Positives = 18/63 (28%)
Frame = +2
Query: 743 KXPPPXXGGXXPPGXXKXXGXPPXXPPXGPPXXPPXXXPXXXXXXPXXPXXPXGGGXXXP 922
K PPP PP + G PP PP P P P G P
Sbjct: 309 KRPPPP-----PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363
Query: 923 XXP 931
P
Sbjct: 364 PPP 366
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 856 GXXGGXXGGXPGGXXGGXP 800
G GG GG PGG GG P
Sbjct: 613 GAPGGAPGGMPGGAPGGAP 631
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 847 GGXXGGXPGGXXGGXP 800
GG GG PGG GG P
Sbjct: 612 GGAPGGAPGGMPGGAP 627
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/66 (27%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Frame = +3
Query: 651 PXGPXXGPXPXXXGPXWGVXXXG-PPPPXAXXXXPXLXGGGXXPRGXXKXXGFPPXXPPG 827
P G P P P G PP P P + P G PP PP
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPS 1214
Query: 828 XPPXXP 845
P P
Sbjct: 1215 TAPPVP 1220
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/68 (26%), Positives = 19/68 (27%), Gaps = 2/68 (2%)
Frame = +3
Query: 651 PXGPXXGPXPXXXGPXWGVXXXGPPPPXAXXXXPXLXGGGXXPRGXXKXXGFPPXXPP-- 824
P G P P P V PP P P + P PP P
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Query: 825 GXPPXXPP 848
G PP P
Sbjct: 1177 GIPPVPKP 1184
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.9 bits (59), Expect = 2.2
Identities = 19/59 (32%), Positives = 20/59 (33%)
Frame = -2
Query: 801 PXFFXXPGGXXPPXXGGGXFXWXPGGGGPXXKPPXXAPXXGVXAPXXGPXAQRXFPGXP 625
P F PG PP G P PP A G+ AP G A PG P
Sbjct: 495 PTTFAPPGVPLPPIPGAPGMP-NLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIP 552
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 819 PPGXPPXXPPXXPXXXXXGXXXXPXPPG 902
PPG PP PP P P PPG
Sbjct: 5 PPGNPPPPPP-PPGFEPPSQPPPPPPPG 31
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 482 PPPPGXGXLXLGPPPVXXP 538
PPPP G GPPP P
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781
Score = 25.8 bits (54), Expect = 8.8
Identities = 14/50 (28%), Positives = 14/50 (28%)
Frame = +2
Query: 749 PPPXXGGXXPPGXXKXXGXPPXXPPXGPPXXPPXXXPXXXXXXPXXPXXP 898
PPP P PP P G P PP P P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,977
Number of Sequences: 5004
Number of extensions: 30729
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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